PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02302.1.p | ||||||||
Common Name | EUGRSUZ_K02302, LOC104425863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 484aa MW: 53245.8 Da PI: 6.6477 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+e++++a k++G g W+ I +++g ++t+ q++s+ qk+ Eucgr.K02302.1.p 59 REKWTDEEHERFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-17 | 53 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.548 | 54 | 108 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-16 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-9 | 59 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MAGEAQNEVA VSSALFTVPN RPSKVGSQLE AVDNLKELQV LENDQTPKVR KPYTISKQRE 60 KWTDEEHERF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVARG VSGSSEGVIK 120 PIEIPPPRPK RKPMHPYPRK SVDSKEVKLS YQQERSPSPI SSVADENTGS PTSVLSAHGS 180 DMLGSASLHQ QNRCSSPTSC TTDVPSIGLA VIEKQPEIFK EEDKGCLSST QMPSGLTLGN 240 LPSMNCDLSS RNTSSPEEIG GTEAPSIKLF GRTVLVTEIQ KPDHQEAGIK KSPVQKTGED 300 DSVTEDEGLG KPLSSVEFDM QLSLGLACGN NGFLHSGAHA ATAMKLQKED VESSRFTSDC 360 FLPWWPLYQG PPFIYVTPSD STLIQGPLDS HEDRKMEVEE IIKETSSETN TVAKKTEGYG 420 DNNVENNADG VFPKCRKHLE RRTHPGDCKK GFVPYKRCLA ERDVKSPVIV SEERQAQRTR 480 VCS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02302.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037006.1 | 0.0 | PREDICTED: protein REVEILLE 7 | ||||
Refseq | XP_010037007.1 | 0.0 | PREDICTED: protein REVEILLE 7 | ||||
TrEMBL | A0A059A496 | 0.0 | A0A059A496_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037005.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9174 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 3e-48 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02302.1.p |
Entrez Gene | 104425863 |