PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K02085.1.p | ||||||||
Common Name | EUGRSUZ_K02085, LOC104425677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 24923.4 Da PI: 9.6928 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 96.8 | 2.4e-30 | 47 | 134 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka+++vkk+k+gkw+vtk+ +eHnH+l Eucgr.K02085.1.p 47 FYDTYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKSRPRR-SENRKPRAITREGCKAMIVVKKDKTGKWVVTKFIKEHNHPLI 134 9*******************************************99.9***************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-28 | 47 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MDERPSVVED GDAIECSSGK DAPNEESSDM EPSVGMEFES EEAAKVFYDT YATHMGFIMR 60 VDAFRRSMRD GKVVWRRLVC NKEGFRKSRP RRSENRKPRA ITREGCKAMI VVKKDKTGKW 120 VVTKFIKEHN HPLIAAPANS HRSVLLSQKP DEKDVKIREL TAELQRERKR SAAYLEQLEM 180 VLRDMEEHSG RLSKSIEVIV KSVREIDSRR APVSSSQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K02085.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036738.1 | 1e-158 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 2e-30 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A059A3W6 | 1e-157 | A0A059A3W6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036738.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-87 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K02085.1.p |
Entrez Gene | 104425677 |
Publications ? help Back to Top | |||
---|---|---|---|
|