PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01971.1.p
Common NameEUGRSUZ_K01971, LOC104425598
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 451aa    MW: 48995.4 Da    PI: 5.4484
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01971.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31222280259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Eucgr.K01971.1.p 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 280
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787216282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-31218282IPR003657WRKY domain
SuperFamilySSF1182903.27E-26220282IPR003657WRKY domain
SMARTSM007741.4E-37221281IPR003657WRKY domain
PfamPF031069.5E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MCSLFKQDQI MDNYHQGDLT DIIRAGGSGM VGEPAVATNT WQFPSMDNPE SFSSAMDENS  60
NPHSFGDPFS SMRDPLLHNI NMPNSGFLKP AEMVSPSFDS TGDFSSNSSV MYAAPPIEDD  120
LKRPCNIFTR MLQITPNKLP ISPCGSPVMA ASPPGIQNPS IIPSDMISLN GSKVCLVDNS  180
AMQISSPRNP GIKRRKSQAK KVVCIPAPAA ANSRAGGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSTQPSKN  300
SNVTSKNSPN SQTHKHISPK EEQKEDVNDS TIPMEPSGGL AAGATAGASI KEENENKMDR  360
QMEFDDEEFG DGLGHGYRPS MLDANQTDDF FADLGELEAD PLDLLFNQGF PGDHGHEKGD  420
KALDPFSLLD WSDNNSSNNN TSFNGVKRGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-26196283280Disease resistance protein RRS1
5w3x_D8e-26196283280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01971.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036632.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotO647473e-98WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A059A3C80.0A0A059A3C8_EUCGR; Uncharacterized protein
STRINGXP_010036632.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-100WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]