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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Eucgr.K01835.1.p |
| Common Name | EUGRSUZ_K01835, LOC104425490 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family |
C3H |
| Protein Properties |
Length: 303aa MW: 31756.2 Da PI: 9.7803 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.K01835.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.7 | 3.9e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck+G++C+FaHg+
Eucgr.K01835.1.p 101 KTRMCNKYNTAEGCKFGNKCHFAHGE 126
89**********************96 PP
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| 2 | zf-CCCH | 35.5 | 1.6e-11 | 269 | 293 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC++f + G C +G+rC+FaHg
Eucgr.K01835.1.p 269 YKTKLCDNFVK-GSCTFGERCHFAHG 293
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 3.5 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.836 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-6 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.5E-14 | 97 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.2 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.793 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-4 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.05E-15 | 164 | 245 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 7.2E-13 | 174 | 244 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.34 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.0E-16 | 175 | 245 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.12E-14 | 177 | 239 | No hit | No description |
| Pfam | PF00013 | 8.7E-12 | 177 | 241 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-16 | 264 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.67E-9 | 267 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-7 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.352 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.4E-9 | 269 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDTRKRGRPE GGSYANGGLK KPKQELESLS GVGSKSKPCT KFFSIAGCPF GEGCHFLHYV 60
PGGYNAVAQM MNLAPAVPQA PRNMAAPPLQ NGTGASQPAV KTRMCNKYNT AEGCKFGNKC 120
HFAHGEWELG KPIAPSFDDP RSMGPITGPI TSHRLGGRME PLPPPPGPVS SFGASATAKI 180
SVDASLAGAI IGKGGVNSKQ ICRQTGAKLS IRDHESNPAL RNIEFEGTFE QIKQASTMVR 240
ELIDNISALT GHSKGHGGPG GPAPPGSNYK TKLCDNFVKG SCTFGERCHF AHGAAELRKT 300
AL*
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