PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01384.1.p

Common Name

EUGRSUZ_K01384, LOC104427346

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 268aa MW: 31472.4 Da PI: 9.1733

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01384.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	251.9	2.4e-77	2	265	111	374
GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ++H+iDf+i +G+ Wp+L+q L++Rp + p+lRiTg++ p++g +e+++etg+rLa++A++++vpfe+n+ +akr+e +elee++++++E+ Eucgr.K01384.1.p 2 KIHVIDFGILYGFRWPTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAQSFNVPFEYNA-IAKRWEFIELEEFKIDRDEV 92 79*********************876.9********9*************************.7*************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++V+++++ ++l+de+ es rd vL+l+++ +P+++++ + hns+ F++rf eal+++s+ fd+l++ +p e++er+ +E+ +lgre+ Eucgr.K01384.1.p 93 TIVSCMFRFKSLFDETIVEESSRDVVLNLIRRAQPNLFIHGVINGTHNSPFFVTRFREALHHFSSPFDMLDTIVPCENQERMLIEKDMLGREA 185 ***************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n +aceg er+e e++++W+ r ++aGF +vpls + a+ + ++ + + + v+e ++l+lgWk+r +++S W+ Eucgr.K01384.1.p 186 LNTIACEGWERVEGPESYKQWQLRNMRAGFVQVPLSRRLAQFVINNIALRYHKDFVVDEVGKWLLLGWKGRFRYAFSTWK 265 *********************************99888777777777677***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.081	1	245	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-75	2	265	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MKIHVIDFGI LYGFRWPTLI QRLSQRPCPP KLRITGIDLP QPGFRPAERV KETGQRLANY 60 AQSFNVPFEY NAIAKRWEFI ELEEFKIDRD EVTIVSCMFR FKSLFDETIV EESSRDVVLN 120 LIRRAQPNLF IHGVINGTHN SPFFVTRFRE ALHHFSSPFD MLDTIVPCEN QERMLIEKDM 180 LGREALNTIA CEGWERVEGP ESYKQWQLRN MRAGFVQVPL SRRLAQFVIN NIALRYHKDF 240 VVDEVGKWLL LGWKGRFRYA FSTWKLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-28	2	265	110	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01384.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010038752.2	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	1e-118	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059A2R6	0.0	A0A059A2R6_EUCGR; Uncharacterized protein
STRING	XP_010038752.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-120	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01384.1.p
Entrez Gene	104427346