PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01371.2.p
Common NameEUGRSUZ_K01371
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 486aa    MW: 53769.1 Da    PI: 7.8096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01371.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-08426480146
                       TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                       r+rW++eE+e+l+  v+++ ++      W++I ++        Rt+ ++k++w +
  Eucgr.K01371.2.p 426 RLRWSPEEEEILKARVQLFSSNankniPWRKILEYGCrvfnPSRTPVDLKDKWKN 480
                       89********************************9989999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.3E-882144IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.51E-884146IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002495.7E-595140IPR001965Zinc finger, PHD-type
SMARTSM007175.0E-6425484IPR001005SANT/Myb domain
SuperFamilySSF466894.26E-8425481IPR009057Homeodomain-like
PROSITE profilePS500907.433425482IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-9426481IPR009057Homeodomain-like
CDDcd116601.82E-9428481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MRVETRRKSL PKPSAAAAAA AAPMSRTPCC PENVANKEDG VLGTNECNVR VEQHGEEVPG  60
TDPVEILPVE KSQNGGLRNV SSQESADIHI LEKRTCLTCN GHGQLLVCSE PSCPIAIHEK  120
CLSCKPQFDH LGNFYCPYCS YKRVVAKVHE LRRKAMLRKE ALSNFLDNGV VDKGQREQIS  180
GVDKRGDLDL SPSPGHDSCH DDVSKENYEG QHQSDPVNPV YSKHEALVEN QTDTLAPSVH  240
VQRNLVYEEG LQEGESREAT DNHCKEVYDQ EKAETADDHT SKEGAAEAAE DAVLSKSSEG  300
KRHRKSIRRS HGLSRKRKRR KVQSGDATVS SIQGDFATDV NPEANMVDQV CDSDAEAGFM  360
NNGHSPSAKP QGKAPVEEVV SPRNGSSEPG ITITNQGKAT LAEMSRQQRQ SPRKLPKPPL  420
PNVKRRLRWS PEEEEILKAR VQLFSSNANK NIPWRKILEY GCRVFNPSRT PVDLKDKWKN  480
IATRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319RKRKRR
2314320RKRKRRK
3315320KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01371.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036112.10.0PREDICTED: uncharacterized protein LOC104425191
TrEMBLA0A059A1L50.0A0A059A1L5_EUCGR; Uncharacterized protein
STRINGXP_010036112.10.0(Eucalyptus grandis)