PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01371.1.p
Common NameEUGRSUZ_K01371, LOC104425191
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 493aa    MW: 54394.7 Da    PI: 7.341
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01371.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09433487146
                       TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                       r+rW++eE+e+l+++v+++ ++      W++I ++        Rt+ ++k++w +
  Eucgr.K01371.1.p 433 RLRWSPEEEEILKEGVQLFSSNankniPWRKILEYGCrvfnPSRTPVDLKDKWKN 487
                       89********************************9989999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.4E-889151IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.55E-891153IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002495.7E-5102147IPR001965Zinc finger, PHD-type
SMARTSM007174.3E-7432491IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-9432488IPR009057Homeodomain-like
PROSITE profilePS500907.654432489IPR017877Myb-like domain
PfamPF002491.3E-6433487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10433488IPR009057Homeodomain-like
CDDcd116601.35E-11435488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MRVETRRKSL PKPSAAAAAA AAPMAAPSPD QSRTPCCPEN VANKEDGVLG TNECNVRVEQ  60
HGEEVPGTDP VEILPVEKSQ NGGLRNVSSQ ESADIHILEK RTCLTCNGHG QLLVCSEPSC  120
PIAIHEKCLS CKPQFDHLGN FYCPYCSYKR VVAKVHELRR KAMLRKEALS NFLDNGVVDK  180
GQREQISGVD KRGDLDLSPS PGHDSCHDDV SKENYEGQHQ SDPVNPVYSK HEALVENQTD  240
TLAPSVHVQR NLVYEEGLQE GESREATDNH CKEVYDQEKA ETADDHTSKE GAAEAAEDAV  300
LSKSSEGKRH RKSIRRSHGL SRKRKRRKVQ SGDATVSSIQ GDFATDVNPE ANMVDQVCDS  360
DAEAGFMNNG HSPSAKPQGK APVEEVVSPR NGSSEPGITI TNQGKATLAE MSRQQRQSPR  420
KLPKPPLPNV KRRLRWSPEE EEILKEGVQL FSSNANKNIP WRKILEYGCR VFNPSRTPVD  480
LKDKWKNIAT RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326RKRKRR
2321327RKRKRRK
3322327KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01371.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036112.10.0PREDICTED: uncharacterized protein LOC104425191
TrEMBLA0A059A1E30.0A0A059A1E3_EUCGR; Uncharacterized protein
STRINGXP_010036112.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1539557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-06MYB_related family protein