PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01320.1.p
Common NameEUGRSUZ_K01320
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 782aa    MW: 83651.2 Da    PI: 6.2529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.61.5e-1254097632373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lLl+cAeavs+++le+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++  +lp+ + s     +  +a+++f+ +sP++kfs
  Eucgr.K01320.1.p 409 LTLLLQCAEAVSADNLEEANRMLLEISELSTPYGTSAQRVAAYFSEAISARLVNSCLGIDMTLPSVPHS----HKISSAFQVFNGISPFVKFS 497
                       579*********************************************************999999986....788999************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL +fA++lg+pfef + va+++ 
  Eucgr.K01320.1.p 498 HFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SVEALEATGKRLGDFADKLGLPFEFIP-VAEKVG 585
                       *******************************************************....9**************************.7***** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +l++e+L+v+++Ea+aV+l    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++ese
  Eucgr.K01320.1.p 586 NLDPERLNVSKREAVAVHLLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESE 671
                       *******************99..999999999999....**********************.899**************************** PP

              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       er++vE++ll+rei+nv+a  g +r  +  ++ +Wre+l++aGF+ v+l  +aa+qa lll +++ dgy++ e++g+l lgWkd  L+++SaW
  Eucgr.K01320.1.p 672 ERHVVEQQLLSREIRNVLAFGGPSRSGEA-KFTSWREKLQQAGFRGVSLAGNAATQATLLLGMFSCDGYTLVEDNGALKLGWKDLCLLTASAW 763
                       ***********************977665.5************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.754382744IPR005202Transcription factor GRAS
PfamPF035145.2E-123409763IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MAACALLSGG DNGGSNSNND DSNGRRESPG FMSSSNVGAS AGDHLLNALH LHHHRRQLHQ  60
QPPPPPQESG NRMRKRMASE LEVQAPPSAD YFRLSRRNTS AAATATAVAS AASLMSNPLS  120
DANCFVPSRD VIIPNHSTMS MLPSSTNLTV TSLGPGFLSP TPCTTIATTT TSPYAAETAL  180
SPLLPSQPQS QTPALCVFSG LPLFPPEKPL AAAGFAPPPP TAINPSVGAG GVPMDDSSAT  240
AWIDGIIKDL IQNSTSVSIP QLIHNVREII YPCNPNLAAV LEYRLRSLMK EPVPAVDLQL  300
QRQYDNQHFS VPDSMVPHGQ YLNYGLASLP AAVGQGGSRR LQEHEASASS AGAPQQRSEA  360
ENDKSSTSGE TAPTPTATAA SAAAAAALAR ERKEEMRNQK KDEEGLHLLT LLLQCAEAVS  420
ADNLEEANRM LLEISELSTP YGTSAQRVAA YFSEAISARL VNSCLGIDMT LPSVPHSHKI  480
SSAFQVFNGI SPFVKFSHFT ANQAIQEAFE REERVHIIDL DIMQGLQWPG LFHILASRPG  540
GPPHVRLTGL GTSVEALEAT GKRLGDFADK LGLPFEFIPV AEKVGNLDPE RLNVSKREAV  600
AVHLLQHSLY DVTGSDTNTL WLLQRLAPKV VTVVEQDLSH AGSFLGRFVE AIHYYSALFD  660
SLGASYGEES EERHVVEQQL LSREIRNVLA FGGPSRSGEA KFTSWREKLQ QAGFRGVSLA  720
GNAATQATLL LGMFSCDGYT LVEDNGALKL GWKDLCLLTA SAWSPLNLHA TSAGLIRHFS  780
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03927653380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685832.10.0protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A059A1920.0A0A059A192_EUCGR; Uncharacterized protein
STRINGcassava4.1_001737m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein