PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01089.1.p
Common NameEUGRSUZ_K01089, LOC104424977
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 359aa    MW: 39055.3 Da    PI: 7.9236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.2e-3522138289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssss 81 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++             s          +   s
  Eucgr.K01089.1.p  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELppwqpnsssvpstS----------TAPDS 104
                       79**************************************************************87554443332221..........11111 PP

               TCP  82 asnsssg..........................k 89 
                       a++++++                          +
  Eucgr.K01089.1.p 105 AAHNGNSaemavaeesespkynfqlhrqisansR 138
                       1111111122222222223333333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3122136IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2812482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGMKSTEGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKAAID KLAELPPWQP NSSSVPSTST APDSAAHNGN SAEMAVAEES  120
ESPKYNFQLH RQISANSRNA TSQFLPPQLE NDQSMLETMK SFFPTSSAAS SINFSSYPSE  180
IMSRSTQQNQ DLGLSLHSLQ SQSALIHQSD PQENEMSQTL FSTSAPMVYE PGFQRMMGWG  240
TDPSGTDNRS GGRFLFNSPT PLTLPLPLLS QGSAAFPQRG TLQSSFAPTF RSLDEFSVDS  300
ADHHKSQVIH HPSSLFGNRF VSDGLPGFCI SPQIQNNGAP HDVVSARPSS SASLSNGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-222982154Putative transcription factor PCF6
5zkt_B4e-222982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01089.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035834.10.0PREDICTED: transcription factor TCP4
TrEMBLA0A059A1U30.0A0A059A1U3_EUCGR; Uncharacterized protein
STRINGXP_010035834.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-42TCP family protein