PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01038.1.p
Common NameEUGRSUZ_K01038, LOC104424927
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 218aa    MW: 24263.9 Da    PI: 7.7199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-102376155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                      rr+  +++E++RR+r+++ ++ L +llP+ +   +s+   s  +   +A+ YIk L+
  Eucgr.K01038.1.p 23 RRTERKIIEKNRRNRMKHLYSVLNSLLPSqP---SSQEaKSLPDQIDEAILYIKGLE 76
                      79999************************66...556568888***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.33E-52080No hitNo description
SuperFamilySSF474592.09E-102097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4962275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-92392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-62375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-42881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MALSLANVIG KEMDRGLQPS SPRRTERKII EKNRRNRMKH LYSVLNSLLP SQPSSQEAKS  60
LPDQIDEAIL YIKGLEKAVK EAKDKKENLM GKKRPSPSPS PSSNTLEAIK SPQIEIGVRD  120
SSLEVILTSG LHDQFIFLEI LRMLHEEKVE VLNANFSVVE NSVYHLVHAK IGESGLGAVM  180
IAERLKTLVN GSATDGGPEE FYPKLWDCEL SSNIWNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035765.11e-158PREDICTED: uncharacterized protein LOC104424927
TrEMBLA0A059A0A51e-157A0A059A0A5_EUCGR; Uncharacterized protein
STRINGXP_010035765.11e-157(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-23bHLH family protein