PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00873.1.p
Common NameEUGRSUZ_K00873
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 484aa    MW: 54342.1 Da    PI: 5.8079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00873.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2761.1e-84984802367
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lLl+cA a++ +d +laq++++ l++ as++gdp+qRl++ f++AL +r +r +++ ++       +++    +++ l +++++ P+++f+
  Eucgr.K00873.1.p  98 EKLLLHCASALERNDVTLAQQVMWVLNNVASSTGDPNQRLTSWFLKALISRASRLCPTAVNFNGNGIVERRL--MSVTELAVYVDLIPWHRFG 188
                       689***************************************************777777655333333222..222233459********** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                       + +aN+aI++a++g +rvHi+Df+i++++QWp+L++aLa+Rpegppsl+iT+ +   ++    + + ee+g rL +fA+  +vpfef vl   
  Eucgr.K00873.1.p 189 YCAANSAIYRAIQGYSRVHILDFSITHCMQWPTLIDALAKRPEGPPSLKITVPSCRPPVpplLNVTSEEIGLRLGNFAKFRDVPFEFIVLdds 281
                       ***************************************************9777656677999999************************99 PP

              GRAS 182 ...........vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                                   ++ l++l+  +L++  +Eal++n++  + +l de+  ++s     rd +L+++k l P++v++v++++d+ ++s++ r++ 
  Eucgr.K00873.1.p 282 pnasesdnpfhFESILSQLSSLDLNLADDEALVINCQNWVRYLCDEPNGVDSrdasLRDIFLDIIKALDPNLVILVDEDVDLCEPSLASRITT 374
                       9988877776545566777777778888******************99888866668999********************************* PP

              GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                       +++y +  fd+le+ lp++s +r  +E   +g +i+n++  eg++r+er e  +k  +r+++aGF ++p++e++++++k+ll +++  g+ ++
  Eucgr.K00873.1.p 375 CFNYLWIPFDALETFLPKDSCQRLEYESD-IGHKIENIIGFEGFQRIERLELGSKLVQRMKNAGFLSLPFGEETVSEVKSLLDEHA-SGWGMK 465
                       *****************************.********************************************************.889999 PP

              GRAS 353 eesgslvlgWkdrpL 367
                        e+++lvl+Wk+++ 
  Eucgr.K00873.1.p 466 REEDTLVLTWKGHNS 480
                       99*********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.85771468IPR005202Transcription factor GRAS
PfamPF035143.9E-8298480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
THTTRVKQIN SHQPGRKWKL VLHTFSSPSK LPCTLRQQNP DYIFSQKASF QFIMKAELRG  60
NATSSIYLQN LSLFNTQQSS LSGALKGCLG SLDAACIEKL LLHCASALER NDVTLAQQVM  120
WVLNNVASST GDPNQRLTSW FLKALISRAS RLCPTAVNFN GNGIVERRLM SVTELAVYVD  180
LIPWHRFGYC AANSAIYRAI QGYSRVHILD FSITHCMQWP TLIDALAKRP EGPPSLKITV  240
PSCRPPVPPL LNVTSEEIGL RLGNFAKFRD VPFEFIVLDD SPNASESDNP FHFESILSQL  300
SSLDLNLADD EALVINCQNW VRYLCDEPNG VDSRDASLRD IFLDIIKALD PNLVILVDED  360
VDLCEPSLAS RITTCFNYLW IPFDALETFL PKDSCQRLEY ESDIGHKIEN IIGFEGFQRI  420
ERLELGSKLV QRMKNAGFLS LPFGEETVSE VKSLLDEHAS GWGMKREEDT LVLTWKGHNS  480
VFAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-499148481470Protein SHORT-ROOT
5b3h_B2e-499148427416Protein SHORT-ROOT
5b3h_E2e-499148427416Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00873.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035620.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A059A0610.0A0A059A061_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010035620.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-122GRAS family protein