PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00250.1.p
Common NameEUGRSUZ_K00250
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 269aa    MW: 30369.8 Da    PI: 7.1412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  Eucgr.K00250.1.p 15 KGLWSPEEDQKLRNYVLKHGHGCWSSVPINTGLQRNGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding54.33.2e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +T eE+e++  ++++ G++ W+ Ia++++ gRt++++k++w++yl
  Eucgr.K00250.1.p  68 RGMFTMEEEEIIFSLHHLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 113
                       788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0691062IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-221065IPR009057Homeodomain-like
SuperFamilySSF466892.1E-3012109IPR009057Homeodomain-like
SMARTSM007171.5E-111464IPR001005SANT/Myb domain
PfamPF002492.4E-141562IPR001005SANT/Myb domain
CDDcd001671.25E-101862No hitNo description
PROSITE profilePS5129426.19663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2666117IPR009057Homeodomain-like
SMARTSM007176.3E-1467115IPR001005SANT/Myb domain
PfamPF002499.9E-1668113IPR001005SANT/Myb domain
CDDcd001672.41E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MALKSSERPK PKHRKGLWSP EEDQKLRNYV LKHGHGCWSS VPINTGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTMEEEEIIF SLHHLIGNKW SQIAKHLPGR TDNEIKNHWH SYLKKKVANK  120
TESLSSSLEA HHHARSQCTN SDNVESSPPP DQIPPNQNPS VHAPSQEQKE KTSFDFQRDG  180
LRSYLPQIFF AEWLNQADQG NNIPNYGDAF DDCLNLQDPL VPDLCTSDFG NSYGGEYVGS  240
ELSNGSASAS VSDMYSSQLK LEMGSGFGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27111173108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035125.10.0PREDICTED: transcription factor LAF1
TrEMBLA0A058ZXB90.0A0A058ZXB9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010035125.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-58myb domain protein 19