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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Eucgr.K00207.1.p |
Common Name | EUGRSUZ_K00207, LOC104424378 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family |
MIKC_MADS |
Protein Properties |
Length: 229aa MW: 26244 Da PI: 10.4388 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Eucgr.K00207.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.2 | 5.8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien + rqvtfskRr+g+lKKA+ELSvLC+aevaviifs++gklye+ss
Eucgr.K00207.1.p 10 RIENATSRQVTFSKRRKGLLKKAYELSVLCEAEVAVIIFSQNGKLYEFSS 59
8***********************************************96 PP
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2 | K-box | 44.1 | 8.5e-16 | 86 | 142 | 13 | 69 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69
+l+qe + ++++ie L+ +q +l G++L+s+s++e+q++ +qLe+sl++iR++K
Eucgr.K00207.1.p 86 YILHLKQETTDMERKIELLEVSQQKLSGQCLGSCSINEIQEIGDQLEQSLSSIRKRK 142
45689***************************************************9 PP
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3 | K-box | 13.8 | 2.5e-06 | 163 | 191 | 70 | 98 |
K-box 70 nellleqieelqkkekelqeenkaLrkkl 98
+l+ +qi++lq ke+ l+een +L +k+
Eucgr.K00207.1.p 163 AQLFNDQIQQLQAKERHLKEENAKLLAKF 191
68999********************9987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.188 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.41E-37 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 7.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-32 | 3 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.119 | 87 | 197 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-19 | 89 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MARGKTKMRR IENATSRQVT FSKRRKGLLK KAYELSVLCE AEVAVIIFSQ NGKLYEFSSN 60 SEIRKTIDRY RRSTNVDTYQ ANVERYILHL KQETTDMERK IELLEVSQQK LSGQCLGSCS 120 INEIQEIGDQ LEQSLSSIRK RKVWGQHART RKLKWLYGSL LQAQLFNDQI QQLQAKERHL 180 KEENAKLLAK FLANPWQSTA HPRAAAINSR SSRGTDVETG LFIGLPES*
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY263807 | 0.0 | AY263807.1 Eucalyptus grandis SOC1-like floral activator MADS3 mRNA, complete cds. |