PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00204.1.p
Common NameEUGRSUZ_K00204, LOC104424377
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24035.5 Da    PI: 10.1941
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00204.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-301059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  Eucgr.K00204.1.p 10 RIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                      8***********************************************96 PP
2K-box61.24e-21841711097
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        e+   +l++e   ++++ie L+ ++ +l G++L+s+s+ e+q + +qLe+sl++iR++K +l+ +q ++lq ke++l+een +L +k
  Eucgr.K00204.1.p  84 MEQRILHLKRETMEMERKIELLEVSLQKLSGQCLGSCSIDEIQGIGDQLERSLSSIRKRKVQLFNDQRQQLQAKERSLREENAKLLAK 171
                       567778999****************************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.34E-39376No hitNo description
SuperFamilySSF554551.44E-31383IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.9E-1986172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.08688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVRGKIQMRR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSN  60
SEIRKTIDRY RGSTNDVDTY QANMEQRILH LKRETMEMER KIELLEVSLQ KLSGQCLGSC  120
SIDEIQGIGD QLERSLSSIR KRKVQLFNDQ RQQLQAKERS LREENAKLLA KCLANHGQST  180
ANPRATTIHR RSSWSTDVET GLFIGLPES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-17159159Myocyte-specific enhancer factor 2B
1tqe_Q5e-17159159Myocyte-specific enhancer factor 2B
1tqe_R5e-17159159Myocyte-specific enhancer factor 2B
1tqe_S5e-17159159Myocyte-specific enhancer factor 2B
5f28_A5e-17170169MEF2C
5f28_B5e-17170169MEF2C
5f28_C5e-17170169MEF2C
5f28_D5e-17170169MEF2C
6byy_A6e-17170169MEF2 CHIMERA
6byy_B6e-17170169MEF2 CHIMERA
6byy_C6e-17170169MEF2 CHIMERA
6byy_D6e-17170169MEF2 CHIMERA
6c9l_A5e-17159159Myocyte-specific enhancer factor 2B
6c9l_B5e-17159159Myocyte-specific enhancer factor 2B
6c9l_C5e-17159159Myocyte-specific enhancer factor 2B
6c9l_D5e-17159159Myocyte-specific enhancer factor 2B
6c9l_E5e-17159159Myocyte-specific enhancer factor 2B
6c9l_F5e-17159159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00204.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638080.0AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035074.11e-152PREDICTED: MADS-box protein AGL42
SwissprotQ9FIS12e-69AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZZ531e-151A0A058ZZ53_EUCGR; Uncharacterized protein
STRINGXP_010035074.11e-152(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-72AGAMOUS-like 42