PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K00203.1.p | ||||||||
Common Name | EUGRSUZ_K00203, LOC104424376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24083.5 Da PI: 9.6664 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss Eucgr.K00203.1.p 10 RIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 72.2 | 1.5e-24 | 85 | 171 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ +l+qe + ++++ie L+ ++R+l G++L+s+s+ e+q++ +qLe+sl++iR++K +l+ +qi++lq ke++l+een +L +k Eucgr.K00203.1.p 85 EQYILHLKQETTDMERKIELLEVSLRKLSGQCLGSCSIDEIQEIGDQLERSLRSIRERKAQLFNDQIQQLQAKERSLKEENAKLLAK 171 5666789*****************************************************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.50E-40 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-32 | 3 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.834 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.0E-23 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MARGKIQMRR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSN 60 SEIRKTIDRY RRSTNGVDTY RANMEQYILH LKQETTDMER KIELLEVSLR KLSGQCLGSC 120 SIDEIQEIGD QLERSLRSIR ERKAQLFNDQ IQQLQAKERS LKEENAKLLA KCLASPEQPT 180 THPRAVAIHS RSSWSTDVET GFFIGLPES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 1e-17 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 1e-17 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 1e-17 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K00203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY263808 | 0.0 | AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035073.2 | 1e-150 | PREDICTED: MADS-box protein AGL42 isoform X1 | ||||
Swissprot | Q9FIS1 | 2e-72 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A058ZX11 | 1e-152 | A0A058ZX11_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035073.1 | 1e-152 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 9e-75 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K00203.1.p |
Entrez Gene | 104424376 |