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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Eucgr.K00203.1.p |
Common Name | EUGRSUZ_K00203, LOC104424376 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family |
MIKC_MADS |
Protein Properties |
Length: 210aa MW: 24083.5 Da PI: 9.6664 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Eucgr.K00203.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 95.2 | 2.8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
Eucgr.K00203.1.p 10 RIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
8***********************************************96 PP
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2 | K-box | 72.2 | 1.5e-24 | 85 | 171 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e+ +l+qe + ++++ie L+ ++R+l G++L+s+s+ e+q++ +qLe+sl++iR++K +l+ +qi++lq ke++l+een +L +k
Eucgr.K00203.1.p 85 EQYILHLKQETTDMERKIELLEVSLRKLSGQCLGSCSIDEIQEIGDQLERSLRSIRERKAQLFNDQIQQLQAKERSLKEENAKLLAK 171
5666789*****************************************************************************988 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.50E-40 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-32 | 3 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.834 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.0E-23 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MARGKIQMRR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSN 60 SEIRKTIDRY RRSTNGVDTY RANMEQYILH LKQETTDMER KIELLEVSLR KLSGQCLGSC 120 SIDEIQEIGD QLERSLRSIR ERKAQLFNDQ IQQLQAKERS LKEENAKLLA KCLASPEQPT 180 THPRAVAIHS RSSWSTDVET GFFIGLPES*
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY263808 | 0.0 | AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds. |