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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Eucgr.K00193.1.p |
| Common Name | EUGRSUZ_K00193 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 203aa MW: 23104.4 Da PI: 10.0364 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.K00193.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 79.9 | 1.8e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien++ +qvtfskR +g+lKKA+ELSvL +aevaviifs++g+l+e+ss
Eucgr.K00193.1.p 10 RIENTTSQQVTFSKRWTGLLKKAYELSVLGNAEVAVIIFSQKGRLHEFSS 59
8***********************************************96 PP
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| 2 | K-box | 69.2 | 1.3e-23 | 85 | 172 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
e+ +l+qe + ++++ie L+ ++R+l G++L+s+s+ ++qq+ +qLe+sl +iR++K +l+ +qi++lq ke++l+ee+ +L +k
Eucgr.K00193.1.p 85 EQYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSMDDIQQMGDQLERSLGSIRERKAQLFNDQIQQLQAKERSLKEEKAKLLAKS 172
55566899***************************************************************************99885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MARGKVQMRR IENTTSQQVT FSKRWTGLLK KAYELSVLGN AEVAVIIFSQ KGRLHEFSSN 60
SEIRKTIDRY RRSTNDAATY QASMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC 120
SMDDIQQMGD QLERSLGSIR ERKAQLFNDQ IQQLQAKERS LKEEKAKLLA KSTAHLTAAA 180
IHSRSSWSTD VETGLFVRLP EC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY263808 | 1e-163 | AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds. |
