PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00193.1.p
Common NameEUGRSUZ_K00193
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23104.4 Da    PI: 10.0364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.8e-251059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien++ +qvtfskR +g+lKKA+ELSvL +aevaviifs++g+l+e+ss
  Eucgr.K00193.1.p 10 RIENTTSQQVTFSKRWTGLLKKAYELSVLGNAEVAVIIFSQKGRLHEFSS 59
                      8***********************************************96 PP
2K-box69.21.3e-23851721198
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       e+   +l+qe + ++++ie L+ ++R+l G++L+s+s+ ++qq+ +qLe+sl +iR++K +l+ +qi++lq ke++l+ee+ +L +k 
  Eucgr.K00193.1.p  85 EQYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSMDDIQQMGDQLERSLGSIRERKAQLFNDQIQQLQAKERSLKEEKAKLLAKS 172
                       55566899***************************************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.217161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32160IPR002100Transcription factor, MADS-box
CDDcd002653.24E-33279No hitNo description
PRINTSPR004045.9E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-27376IPR002100Transcription factor, MADS-box
PfamPF003194.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.1888178IPR002487Transcription factor, K-box
PfamPF014863.9E-2190171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARGKVQMRR IENTTSQQVT FSKRWTGLLK KAYELSVLGN AEVAVIIFSQ KGRLHEFSSN  60
SEIRKTIDRY RRSTNDAATY QASMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC  120
SMDDIQQMGD QLERSLGSIR ERKAQLFNDQ IQQLQAKERS LKEEKAKLLA KSTAHLTAAA  180
IHSRSSWSTD VETGLFVRLP EC*
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638081e-163AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720707.11e-121PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS11e-61AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZX021e-146A0A058ZX02_EUCGR; Uncharacterized protein
STRINGXP_010035069.11e-120(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-57AGAMOUS-like 42