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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K00190.1.p | ||||||||
Common Name | EUGRSUZ_K00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 76aa MW: 8474.91 Da PI: 10.4878 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++ rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++g+l+e+ss Eucgr.K00190.1.p 10 RIENTTSRQVTFSKRRTGLLKKAHELSVLCDAEVAVIIFSQKGRLHEFSS 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-29 | 3 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.94E-38 | 3 | 67 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MVRGKVQMRR IENTTSRQVT FSKRRTGLLK KAHELSVLCD AEVAVIIFSQ KGRLHEFSSN 60 SEKLIVECLA SADLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K00190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035064.1 | 5e-37 | PREDICTED: MADS-box protein AGL42 | ||||
Refseq | XP_018720704.1 | 5e-37 | PREDICTED: MADS-box protein AGL42 | ||||
Refseq | XP_018720705.1 | 5e-37 | PREDICTED: MADS-box protein AGL42 | ||||
Swissprot | Q9LT93 | 6e-29 | AGL71_ARATH; MADS-box protein AGL71 | ||||
Swissprot | Q9XJ60 | 9e-29 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A058ZXZ6 | 2e-46 | A0A058ZXZ6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035064.1 | 2e-36 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 6e-32 | AGAMOUS-like 71 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K00190.1.p |