PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J03076.1.p
Common NameEUGRSUZ_J03076
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 681aa    MW: 78408 Da    PI: 6.3878
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J03076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96.2e-2295177290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY+ YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w+++++eleHnH ++
  Eucgr.J03076.1.p  95 FYSCYAKEHGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDNTRWRIIEVELEHNHLIS 177
                       9***************99997.66779**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1995177IPR004330FAR1 DNA binding domain
PfamPF105517.3E-22297383IPR018289MULE transposase domain
PfamPF044348.4E-5572616IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.161584620IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-4595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
TDTGPPRRVR RRNPAAESWA RRTFASSSSS RLFVEMDEVS LNAEPVGDDE AEELEIEGDS  60
AMTGLVGQTS VIQGENPMPP AVGMEFESYE DVYYFYSCYA KEHGFGVRVS NTWYRKSKER  120
YRGKLSCSSA GFKKKSEANR PRPETRTGCP AMIKFRLMDN TRWRIIEVEL EHNHLISPTS  180
GKFFKSHKVM GVGTKRPLEL EGPEEVETVK LFQTVIIDAE GGKLAADDGD LRKNPDLSNK  240
MKLRKGDAQA ALDFFCQMQL MDPNFFYVAD LNERGYLRNL FWAATRSRVA YRYFGDVVAI  300
DTTFFGQEFD ILLVSFIGVN HHGQPVLLGC GLLAGETFES YVWLLRAWLT CILGHPPQTI  360
ISDQCKALQA AIFDVFPRAS HCIDLTKVMR RISERLEITY QYEAIKAAVY RAVCLSQRAE  420
EFEAAWMDII HEHGLEDHQW FQSLYEERNR WVPVYLKETF LAGMFTIQQN EDATSFFKGY  480
IGNCTSLKEF LDKYDQAMQR SHQLEALADL DSRNSSCMLN SRCNYELQLS KLYTGYIFMK  540
FQKEVEGMYS CFSTRQVNVD GLVTTYTVQE HVELEDGRRE ARDFEVLFNG SEMEVFCACG  600
LFNLRGYLCR HALHVLSQNR VEEVPPQYVL SRWRKDIKRG YVLDQRSAGI DIDNPVHRHE  660
HLHKCILQVM DEARKSQDRS K
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J03076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033973.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A059AIH50.0A0A059AIH5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010033973.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6