PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02851.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 584aa    MW: 63952.2 Da    PI: 8.8175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02851.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05103125123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Eucgr.J02851.1.p 103 FVCEICNKGFQRDQNLQLHRRGH 125
                       89*******************88 PP
2zf-C2H212.20.00054180202123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Eucgr.J02851.1.p 180 WKCEKCSKRYAVQSDWKAHSKIC 202
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.79E-7102125No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5102125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949103125IPR007087Zinc finger, C2H2
SMARTSM003550.017103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355210145175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4168201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.79E-7175200No hitNo description
SMARTSM00355130180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MMKGLIFQQK PQQSGVEDNM SNLTSAASGD ATSASSGNRP TELSGPINNY SHQQYNFAPP  60
QPSTTQITPQ PPLKKKRNLP GNPDPDSEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL  120
HRRGHNLPWK LKQRANKEVI RKKVYVCPEP SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW  180
KCEKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIP  240
NPLLLSSAPQ NMNLPPQFIN TQNIPFTLKK EEPQHHQHQH QQQQISSFGL RQDQIPPWLA  300
CPPPPPIDLS SSSSSIFSTR LDQEFAQSYE HHRSTQQNPN PSPNNPSLGP SYPQATPSPS  360
PNMSATALLQ KAAQMGATMS KSNASFSSPL SGAHQQKQQQ QEEPAHLYIT SSTPDQQHPG  420
RNNNINSSGS GSGGFRLSLS SHEEMASAGF HHHQHMQGLV APFGSNRAIQ DMLMTPGGGG  480
FEGASSFEDP FGGILSSSSK KDSDDINNDS SNNQHEALKA ATQGGLLARR QDVGGGGNNE  540
ELTRDFLGLR PLSHSDILSI AGLGNCMSTT SSQTQVPQKP WQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34176237364Zinc finger protein JACKDAW
5b3h_F2e-34176237364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129142KLKQRANKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02851.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719900.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719901.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719902.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719903.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-134IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A059AIK80.0A0A059AIK8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034809.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-118indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]