PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02823.1.p
Common NameEUGRSUZ_J02823, LOC104422992
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 587aa    MW: 64435.4 Da    PI: 6.9794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08473521348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Eucgr.J02823.1.p 473 AWTIAEVMRLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 521
                       7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774466525IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-12468524IPR009057Homeodomain-like
SuperFamilySSF466894.93E-16468531IPR009057Homeodomain-like
SMARTSM007172.6E-7470523IPR001005SANT/Myb domain
CDDcd116609.76E-20472522No hitNo description
PfamPF002493.0E-6473521IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
METVAGAEGV DETLFEDRGV GKTSPSTSPT KHVSDPVVYK LVRVEGDGTL VPATDDEFME  60
VVDLINDNPN KMHIVEEPGQ AVGISMEDSS SGKSLSELSG FSKFEDVYAD AENLESSIQE  120
TAAPVAPSSD MDQMKQSLDA AECSKSPDQI RESESSCAAT SLLPDFSKLK GEICLDNLSI  180
RELHDTFRAT FGRVTTAKDK TWLKRRIAMG LTNSCDVPST SFVIKENQIL KLGEEENSNN  240
VNCAVETDQD VVAINDQHTD SDNSQKKQLE DCQIISGKRL RNYGPIEDSQ PEVLSREQKS  300
VKRLRKPTRR YIEEVSEVEH HEPTGRSVIP AKSCGWDSPK SGDRPAKNVS PDRRTYVTRL  360
DSVAGLRVPC ISRIRRSRPR KDIMALVGLY HSSGGMSGKL VSKTSRTSSD PKKIQHQGIE  420
LVEKDNQCMT IERVEPEQNL EAKHGDSSGD ASKDNIVTVP TAKGGIRRKH HRAWTIAEVM  480
RLVEGVSRYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LKASFAPAPT DKGMNPRKHV  540
SAPIPAAILL RVRELAELHA QASPNLSTSK LVGCGGSVNG TRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374380RRSRPRK
2374381RRSRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033745.10.0PREDICTED: uncharacterized protein LOC104422992 isoform X1
TrEMBLA0A059AIR00.0A0A059AIR0_EUCGR; Uncharacterized protein
STRINGXP_010033745.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-106TRF-like 6