PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02815.1.p
Common NameEUGRSUZ_J02815
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 559aa    MW: 61135.1 Da    PI: 6.4212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02815.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.49.5e-751735492374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL  cA a+++++l+++q+lL  l+elasp+gdp++Rla++ ++AL  +l+ s ++l ++ +p + s+ +     ++l  f+e sP++ f 
  Eucgr.J02815.1.p 173 EQLLNPCAAAITANNLTRVQHLLYVLHELASPTGDPNHRLASHGLRALTYHLSPS-TSLPSS-APFTFSSAEPRFFQKSLLRFNESSPWFAFP 263
                       689**************************************************93.333333.3333333344444455555*********** PP

              GRAS  95 hltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgv 174
                         + N+ Il+ ++ e    + +Hi+D+++s+G+QWp+Ll+ L+ Rp ++pp +R+T++++  +g         +   + +   L  fA++l++
  Eucgr.J02815.1.p 264 SNIVNSSILQVLSDEpdksRNLHIVDIGVSHGAQWPTLLDNLSRRPgGPPPLVRLTVISPTGEGgnadipfsMAPPGHDVSPLLLGFAKTLNI 356
                       ************9998887899************************55566*********877799999998888999*************** PP

              GRAS 175 pfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealey 263
                       ++e+n   +k  l++l++++++++p+E+l+V+ +++lh+l       +s r+e+Lk v+ lsPk ++++e++ ++   +  +F+++f++ +ey
  Eucgr.J02815.1.p 357 NLEINR-PSKlPLQSLNPQSINTSPDETLIVSAQFRLHYLS------HSDRTEFLKSVRALSPKGMILTENNENCacaGCVDFATGFSRRIEY 442
                       *****9.5555*****************************8......455789*****************99665325666************ PP

              GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee. 354
                        + ++ds++a +    + r + Er+l++ e+  +++   ++    +e  e+W er++eaGF+   l+e+a +  ++llrk++ +++++vee+ 
  Eucgr.J02815.1.p 443 LWRFLDSTSAAF----KGRETEERRLMEGEAARALTSTAEM----NEGRERWCERMREAGFTGEGLGEDAIDGGRALLRKHDgNWEMKVEEDg 527
                       ********8886....8888889999999999999888877....899999*******************************9999*****96 PP

              GRAS 355 .sgslv.lgWkdrpLvsvSaWr 374
                        s++ v lgWk++p+ ++S W+
  Eucgr.J02815.1.p 528 gSHCCVsLGWKGQPVSFCSLWK 549
                       6555557**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.853146525IPR005202Transcription factor GRAS
PfamPF035143.3E-72173549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MTIEEAEPNP HVLGWIEDSV PLFPSFLDDP YDPAEINGYN WWDPNQDFAH DLINTSSASI  60
ASTVTTADSN THADTTAVTT HTATDPTAAA TTNHSEESVK QETSKKRKAS LGNQDHTRRR  120
NRSVSTIENP GSFNVKAAKP VLGGVKRPSS KKRPAMSSGN NSNGGNKEGR WAEQLLNPCA  180
AAITANNLTR VQHLLYVLHE LASPTGDPNH RLASHGLRAL TYHLSPSTSL PSSAPFTFSS  240
AEPRFFQKSL LRFNESSPWF AFPSNIVNSS ILQVLSDEPD KSRNLHIVDI GVSHGAQWPT  300
LLDNLSRRPG GPPPLVRLTV ISPTGEGGNA DIPFSMAPPG HDVSPLLLGF AKTLNINLEI  360
NRPSKLPLQS LNPQSINTSP DETLIVSAQF RLHYLSHSDR TEFLKSVRAL SPKGMILTEN  420
NENCACAGCV DFATGFSRRI EYLWRFLDST SAAFKGRETE ERRLMEGEAA RALTSTAEMN  480
EGRERWCERM REAGFTGEGL GEDAIDGGRA LLRKHDGNWE MKVEEDGGSH CCVSLGWKGQ  540
PVSFCSLWKL TPTSPDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3516955184475Protein SHORT-ROOT
5b3h_B1e-3516955130421Protein SHORT-ROOT
5b3h_E1e-3516955130421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02815.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033735.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A059AIQ30.0A0A059AIQ3_EUCGR; Uncharacterized protein
STRINGXP_010033735.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-139GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]