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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J02278.2.p | ||||||||
Common Name | EUGRSUZ_J02278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 27408.6 Da PI: 9.5165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 39 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C ksF +L rH + H Eucgr.J02278.2.p 39 WRCGYCRKSFYEEKYLDRHFDNrH 62 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.642 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MPFIEKERYQ LPNKCRLHPD YNFYGDQEQH KIHVDINEWR CGYCRKSFYE EKYLDRHFDN 60 RHYDLLNVSQ GKCLADLCGA LHCDLVMDSV QKKTKCNPAA AVRNKHLCES LADSCFPVKE 120 GPSSSRLHEF FLRQFCDAHT CNGRQKPFSK GRRVKKKHIL HRHVYSGSLA VATVLSLCLL 180 VSKGNKKRYT RFEARHRKYT EEKTVLSLWV HKLLSLIVSF SSLFSVSLNL ALEPT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J02278.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033364.1 | 1e-114 | PREDICTED: uncharacterized protein LOC104422670 isoform X1 | ||||
TrEMBL | A0A059AH62 | 1e-174 | A0A059AH62_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033364.1 | 1e-114 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 5e-80 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J02278.2.p |