PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02278.1.p
Common NameEUGRSUZ_J02278, LOC104422670
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 282aa    MW: 32629.5 Da    PI: 9.6273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02278.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027115138123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C++C ksF    +L rH  + H
  Eucgr.J02278.1.p 115 WRCGYCRKSFYEEKYLDRHFDNrH 138
                       58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642115138IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MANTERCRKP SPLAALFVVS LSLCLRFSPA SSSPQGFQGS AAARGLKQDQ GNIHEHEVHC  60
SRERSRAASK IIEEYLMPFI EKERYQLPNK CRLHPDYNFY GDQEQHKIHV DINEWRCGYC  120
RKSFYEEKYL DRHFDNRHYD LLNVSQGKCL ADLCGALHCD LVMDSVQKKT KCNPAAAVRN  180
KHLCESLADS CFPVKEGPSS SRLHEFFLRQ FCDAHTCNGR QKPFSKGRRK RRSIFFIAMS  240
ILVLLLLPLF YLFVYLYQRG IRRGTQDLRR VTESTRKKKP S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02278.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033364.10.0PREDICTED: uncharacterized protein LOC104422670 isoform X1
TrEMBLA0A059AGX40.0A0A059AGX4_EUCGR; Uncharacterized protein
STRINGXP_010033364.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-109C2H2-like zinc finger protein