PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02040.1.p
Common NameEUGRSUZ_J02040
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 676aa    MW: 75695.8 Da    PI: 6.778
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3236e-993296641336
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 
                       l++lL+ cAea+s+gd ++a+ lL++++ ++sp gd+ qR+a+ f+ AL arla+  v++++k l  ++t+     e l+++++ ++++P+ +
  Eucgr.J02040.1.p 329 LRNLLILCAEAISAGDSRNASDLLQQIRLHSSPIGDASQRVAHAFADALDARLAGtPVQSMSKYLCQKRTP---IGEILKIYHTHYKACPFNR 418
                       6899***************************************************5666666666555555...99***************** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       +    aN++Il+ +e++e++HiiDf+i+ G+QWp L+q L+ Rp+gpp+lR+Tg++ pe+g   ++++ e+g  Lak++e++gvpfe+n++v+
  Eucgr.J02040.1.p 419 IVISFANNMILKVAETAETLHIIDFGIKLGFQWPLLIQLLSRRPGGPPKLRLTGIELPEQGfkPEQRIVEVGCHLAKYCEQFGVPFEYNPIVS 511
                       ***********************************************************9999****************************** PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       +++e++++eeL++ ++E+laVn+ ++ + llde+v ++++rd+vLkl+++++P+++v++  +   ns+ F+ rf +al ++sal+d+++ +++
  Eucgr.J02040.1.p 512 QHWETINVEELKIGRNEVLAVNCLYRFKCLLDETVVVNNPRDAVLKLIREMRPDIFVLSVVNGTFNSPFFVPRFRQALFHFSALYDMFDCNVS 604
                       ********************************************************************************************* PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                       r++++r  +Er++ gr+++nv+aceg er+er et+++W++r+++aGFk+ p+++ ++k 
  Eucgr.J02040.1.p 605 RDNNHRLLIERQFYGRQVTNVIACEGWERVERPETYKQWHARISKAGFKQCPMDKAMMKI 664
                       *****************************************************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.062303676IPR005202Transcription factor GRAS
PfamPF035142.1E-96329664IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNSEAKLSDL CSSGTLDGEG ASNSDGNDFS KQILKYIRSM LMEENREDKP CFLYDPSVLW  60
ATEKSLHEVI VLGEKHPALP NHTSEFVCQN APSTDVLFPR TGHDCSNSNG TSNIGCTDNF  120
GEKQTLADST ENRGSTFLAS PSTDCFYQST DLYASRPSSN HPKGLANYVN LILATPTSEF  180
PLQYDSLGAS QRKGGLEEAC KFLSWDTAGV DATNNGNMSV AIKKRGLKVG MDEEAQQQGP  240
FNGMRGRKND GREGNFNKRS AASTEEIEVS EMFDRILLCD EEPEPFASTD GKTSNAAVRN  300
LSLVAHTQGS SGHKNRAKKA KNSEDMVDLR NLLILCAEAI SAGDSRNASD LLQQIRLHSS  360
PIGDASQRVA HAFADALDAR LAGTPVQSMS KYLCQKRTPI GEILKIYHTH YKACPFNRIV  420
ISFANNMILK VAETAETLHI IDFGIKLGFQ WPLLIQLLSR RPGGPPKLRL TGIELPEQGF  480
KPEQRIVEVG CHLAKYCEQF GVPFEYNPIV SQHWETINVE ELKIGRNEVL AVNCLYRFKC  540
LLDETVVVNN PRDAVLKLIR EMRPDIFVLS VVNGTFNSPF FVPRFRQALF HFSALYDMFD  600
CNVSRDNNHR LLIERQFYGR QVTNVIACEG WERVERPETY KQWHARISKA GFKQCPMDKA  660
MMKIYIDKLE AYHKDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-403336578328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02040.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034598.20.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A059AF190.0A0A059AF19_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034598.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-162SCARECROW-like 14