PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J01116.1.p

Common Name

EUGRSUZ_J01116

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 473aa MW: 55334.2 Da PI: 7.9566

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J01116.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.1	5.8e-18	7	85	9	91
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 e GF vrk ++ k+ r+geit+rtf C+++g++ +++++ +++ +rae r+gC a++k k + +g++ev++ ++eHnH+++p Eucgr.J01116.1.p 7 EKGFGVRKGHTVKN-RKGEITRRTFLCNCKGYSVTSSDQ--EKKFERAEVRCGCPAHIKFKVD-NGVYEVIEYVSEHNHTFVP 85 67******9999.7788**********999877..9999*************9.*************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-16	7	85	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-31	181	275	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MWLMQLEKGF GVRKGHTVKN RKGEITRRTF LCNCKGYSVT SSDQEKKFER AEVRCGCPAH 60 IKFKVDNGVY EVIEYVSEHN HTFVPEDQNH LIRCGNTCKG VLSGMMKAGI CGTMAYKFLA 120 NEAGGSKNLD FILRDCQKNL QTESNKIMEG GDCQQLLNHF HRMQMQNLMF FYVVQDCFGD 180 VLVFDSTYRT NRYSLICAPF VGVNHHWKNT VFGCAFLLDE TAESFIWLFN VFLESMRDKA 240 LKTIFTDQDQ VMAKAIRVVF PNTQHRLCTW HIIQNAIKNI PQFYHKPDFR NKYFFRLMNR 300 CKSEDEFEST WMEMEEEWDT QNNNWLQRLY GLRHKWSSAF GRDIFSCGIR SSQRNESTNN 360 VFRHISKKTS SLIKFVYYYE EQLKHIREIE IQDDYRCRGK LRLQVSSNEL LEHAAAIYTH 420 TIFQKFSEEL MECLSVDVSG TTFDGSVYSY TIRFNPVELS ISCECKLFES KG*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MWLMQLEKGF GVRKGHTVKN RKGEITRRTF LCNCKGYSVT SSDQEKKFER AEVRCGCPAH  60
IKFKVDNGVY EVIEYVSEHN HTFVPEDQNH LIRCGNTCKG VLSGMMKAGI CGTMAYKFLA  120
NEAGGSKNLD FILRDCQKNL QTESNKIMEG GDCQQLLNHF HRMQMQNLMF FYVVQDCFGD  180
VLVFDSTYRT NRYSLICAPF VGVNHHWKNT VFGCAFLLDE TAESFIWLFN VFLESMRDKA  240
LKTIFTDQDQ VMAKAIRVVF PNTQHRLCTW HIIQNAIKNI PQFYHKPDFR NKYFFRLMNR  300
CKSEDEFEST WMEMEEEWDT QNNNWLQRLY GLRHKWSSAF GRDIFSCGIR SSQRNESTNN  360
VFRHISKKTS SLIKFVYYYE EQLKHIREIE IQDDYRCRGK LRLQVSSNEL LEHAAAIYTH  420
TIFQKFSEEL MECLSVDVSG TTFDGSVYSY TIRFNPVELS ISCECKLFES KG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J01116.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018721414.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_018721416.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A059ADA9	0.0	A0A059ADA9_EUCGR; Uncharacterized protein
STRING	XP_010027018.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-76	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Eucgr.J01116.1.p