PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01042.1.p
Common NameEUGRSUZ_J01042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 332aa    MW: 35846.7 Da    PI: 5.5792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192171256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Eucgr.J01042.1.p 21 KFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAAQAYDEAARALRGA 71
                      899******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-192178IPR016177DNA-binding domain
PfamPF008478.8E-132170IPR001471AP2/ERF domain
SMARTSM003801.2E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103220.2572178IPR001471AP2/ERF domain
CDDcd000181.72E-302178No hitNo description
Gene3DG3DSA:3.30.730.106.7E-292178IPR001471AP2/ERF domain
PRINTSPR003672.1E-72233IPR001471AP2/ERF domain
PRINTSPR003672.1E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGMPEGSLRG RKKSSSRGHH KFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAAQA  60
YDEAARALRG ANARTNFELP KSELNSSGGN GSGGSCITDN LVPFSFDEMC GNANEAEGLV  120
GALKARLFDG KTSMDKPRVS AAPTAPASNR LANPAQGNPG NSASLQTERQ NPECIPSYDH  180
QERHGVAPVH AQIQFQYPGQ SVAMTSTAMW SSEPSFEVPW DTNTNPVLEN GLFNHGTTIS  240
DTIFMPQAWL ISEAAGTSIS APYTDQCSAE LSASRSWKVS SMSMPMSEND HQTGMECAWP  300
TEQQMLHYES NFPGGANASW DPLFHAFSVL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032135.10.0PREDICTED: dehydration-responsive element-binding protein 2F
TrEMBLA0A059ADT10.0A0A059ADT1_EUCGR; Uncharacterized protein
STRINGXP_010032135.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11