PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00923.1.p
Common NameEUGRSUZ_J00923, LOC104421656
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 713aa    MW: 77677.8 Da    PI: 8.1411
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00923.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.3e-24117218199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Eucgr.J00923.1.p 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 205
                       89****************************996555555..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Eucgr.J00923.1.p 206 AENGDLCVGIRRA 218
                       488999****997 PP
2Auxin_resp118.74.7e-39284367183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa  a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Eucgr.J00923.1.p 284 AAALAASGQPFEVVYYPRASTPEFCVKASSVKAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 367
                       678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-38108221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-29114227IPR015300DNA-binding pseudobarrel domain
CDDcd100178.44E-22116217No hitNo description
PfamPF023623.3E-22117218IPR003340B3 DNA binding domain
SMARTSM010191.4E-22117219IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225117219IPR003340B3 DNA binding domain
PfamPF065073.7E-34284367IPR010525Auxin response factor
PROSITE profilePS5174519.316600680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MTVLKEPERS LDPQLWHACA GGMVQMPPLN SRVFYFPQGH AEHASSAVDF AGSSGGVPPL  60
ILCRVSSVKF LADHESDEVF AKLRLVPLPN TELDFEDDRA LEAAAAGSDN PEKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVIAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGESQAAW SSGGGGSCVP  240
QFGGFSMLLR EEENKLMRNA ANAGCDGGFR GGKGRVRQES VIEAAALAAS GQPFEVVYYP  300
RASTPEFCVK ASSVKAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPIRWPN  360
SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNIPAIHMSP FSPPRKKLRL PHYPDFPLDG  420
NFLVPSFSGN LHGPTGLLCC LSDNAPAGIQ GARQAQFGIP LTDHHLNNRL RLGLLSSNLH  480
RFDPHSRSSN SITKDNTQGS ESLSCVLTMG NCSQSSEKSG DEKKHKFLLF GQPILTEQQI  540
SRGRSGGDVV SDVVSGKGST DGNTGKPKFL SDGVGSTLKQ AGAGFLWRHG FETSELGLET  600
GHCKVFMESE DVGRTLDLSI LGSYEELYRK LGNMFGIERS EMPSHVLYRD AAGTVKRTGD  660
EPFSDFMRTA KRLTIFMDSA GRSIGRTLLT GRRNAENGFD STTKAGPLST YA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-781138851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00923.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031986.10.0PREDICTED: auxin response factor 22 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A059ACB30.0A0A059ACB3_EUCGR; Auxin response factor
STRINGXP_010031986.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]