PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00680.1.p
Common NameEUGRSUZ_J00680
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 303aa    MW: 34909.3 Da    PI: 7.6273
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00680.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35431342102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k+ll
  Eucgr.J00680.1.p  43 FLTKTYQLVDDPRTDHIVSWGEEEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLL 126
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k+
  Eucgr.J00680.1.p 127 CEIHRRKT 134
                       ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.14E-3340132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
METSSNGSRG CGSEEYEHHH HHHHPRHQAA LSVELQKAVP APFLTKTYQL VDDPRTDHIV  60
SWGEEEATFV VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFKKIVADR WEFANEYFRK  120
GAKHLLCEIH RRKTPQHQSH DHTPPPPLPH FFQPVDENLC WPSADPPFPP QPKPLPHGDV  180
LAVLTEDNQR LRRKNLMLLS ELTHMKSLYN DIIYFIQNHV KPLPHDPANN HNDHLDSISV  240
PKLIELDSDQ EGDTCSRMAR LKKAGRSGEE AGRGSNFKLF GVSLSGKKRL HPEKIDRQEL  300
QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-203913426131Heat shock factor protein 1
5d5v_B1e-203913426131Heat shock factor protein 1
5d5v_D1e-203913426131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00680.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768812e-99AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031706.10.0PREDICTED: heat stress transcription factor B-4b
SwissprotQ9C6352e-86HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A059AAG20.0A0A059AAG2_EUCGR; Uncharacterized protein
STRINGXP_010031706.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-84heat shock transcription factor B4