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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02598.1.p | ||||||||
Common Name | EUGRSUZ_I02598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 109aa MW: 12372.3 Da PI: 10.7358 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+++ rqvtfskRrng+lKKA+ELS+LCdaev v+ifs tgkl+e++s Eucgr.I02598.1.p 10 KIDSSASRQVTFSKRRNGLLKKAKELSILCDAEVGVVIFSCTGKLHEFAS 59 79**********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.927 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.80E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MGRGKIVIQK IDSSASRQVT FSKRRNGLLK KAKELSILCD AEVGVVIFSC TGKLHEFASS 60 SMRSTIDRYT KSKEDHHGEK NPVKELRLRQ REVADLKQKL LDMQDNRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-22 | 1 | 92 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 2e-22 | 1 | 92 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 2e-22 | 1 | 92 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 2e-22 | 1 | 92 | 1 | 92 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02598.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029976.1 | 2e-73 | PREDICTED: MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q6EP49 | 6e-46 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A059ATF8 | 1e-72 | A0A059ATF8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029976.1 | 8e-73 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-47 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02598.1.p |
Publications ? help Back to Top | |||
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