PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02464.1.p
Common NameEUGRSUZ_I02464, LOC104419765
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24942.2 Da    PI: 7.08
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02464.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1956109457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       ++++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Eucgr.I02464.1.p  56 KRKLSEEQVNLLEQNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 109
                       4589************************************************95 PP
2HD-ZIP_I/II1185.3e-3855145292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+++k+a++  + e+++Le+ev +L+++l 
  Eucgr.I02464.1.p  55 RKRKLSEEQVNLLEQNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYAKMKSAHEGTVIEKCHLESEVLKLKDQLI 145
                       8**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.98950110IPR001356Homeobox domain
SMARTSM003893.2E-1953114IPR001356Homeobox domain
CDDcd000864.11E-1555111No hitNo description
PfamPF000465.9E-1756109IPR001356Homeobox domain
SuperFamilySSF466893.72E-1856117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2057117IPR009057Homeodomain-like
PRINTSPR000311.3E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.3E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRITMDNDHQ LEEHMALISE LYPGVYTQIV PPVKESKPRR RRKKSKGEGG AAGPRKRKLS  60
EEQVNLLEQN FGSEHKLESE RKDRLASELG LDPRQVAVWF QNRRARWKNK KLEEEYAKMK  120
SAHEGTVIEK CHLESEVLKL KDQLIESEKE IQRLLERADG PAASSNSPSS SMSMDASMDR  180
RFPGEFAYED VFYMQENVYN VYGMDWMNLF DSRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRKKSKGEGGAAGPRKRK
24157RKKSKGEGGAAGPRKRK
35358PRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02464.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029828.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A059ASX51e-157A0A059ASX5_EUCGR; Uncharacterized protein
STRINGXP_010029828.11e-158(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-58homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]