PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 518aa MW: 53951.5 Da PI: 8.6032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I02463.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Eucgr.I02463.3.p 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	11.3	0.0011	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Eucgr.I02463.3.p 141 WKCDKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.6E-7	64	87	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	64	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	65	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	65	87	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.3E-5	65	87	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	106	136	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.1E-4	129	162	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.6E-7	136	161	No hit	No description
SMART	SM00355	150	141	161	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MPTDLDNSST ASGEASVSSS GNQPPPQPPP PPSTTKKKRN LPGMPDPDAE VIALSPTTLL 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VKKRVYVCPE PSCVHHDPSR 120 ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRDS 180 FITHRAFCDA LAEESAKAQT QGQGPGQGSA PVKPNLQADP KVQKPASPPH PHPPPPPRAS 240 APPTVQSSAA VLSTVLADQA AGMQENPSQI LEEPPVTSSL IGSSSSSTSS SSNSKTSTSV 300 IAGLFASSTP SSSLQPPQQS TPYTDLIRAV APPDRSDHGP ASSVEPISLC LSTNHGSSLF 360 GSAGQERRQY APAPQPALSA TALLQKAAQM GATATNASLL RGLGIVSSST SAGQQENLQW 420 NPNNVEHENA SVAAGLGLAL PCDGSSGLKE LMMGTPTMFG PKHPTLDFLG LGMAAGGNPS 480 GGFSGLMNSI GGSLDMAAAA ASFGSGDFVG KDIGQSS*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MPTDLDNSST ASGEASVSSS GNQPPPQPPP PPSTTKKKRN LPGMPDPDAE VIALSPTTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VKKRVYVCPE PSCVHHDPSR  120
ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRDS  180
FITHRAFCDA LAEESAKAQT QGQGPGQGSA PVKPNLQADP KVQKPASPPH PHPPPPPRAS  240
APPTVQSSAA VLSTVLADQA AGMQENPSQI LEEPPVTSSL IGSSSSSTSS SSNSKTSTSV  300
IAGLFASSTP SSSLQPPQQS TPYTDLIRAV APPDRSDHGP ASSVEPISLC LSTNHGSSLF  360
GSAGQERRQY APAPQPALSA TALLQKAAQM GATATNASLL RGLGIVSSST SAGQQENLQW  420
NPNNVEHENA SVAAGLGLAL PCDGSSGLKE LMMGTPTMFG PKHPTLDFLG LGMAAGGNPS  480
GGFSGLMNSI GGSLDMAAAA ASFGSGDFVG KDIGQSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	137	200	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-32	137	200	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I02463.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029827.1	0.0	PREDICTED: protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-178	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A059ATM8	0.0	A0A059ATM8_EUCGR; Uncharacterized protein
STRING	XP_010029827.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Eucgr.I02463.3.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]