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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02442.1.p | ||||||||
Common Name | EUGRSUZ_I02442, LOC104419745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10923.3 Da PI: 5.5745 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.1e-07 | 14 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+e +l+ da + + g +W +Ia+ +g + + +++k ++ Eucgr.I02442.1.p 14 TWTAEKNKLFEDALAVYEEGtldRWQRIANAVGGKTSVEEVKKHY 58 7********************************444677888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0051 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-9 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-5 | 14 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASNPALLTC PGSTWTAEKN KLFEDALAVY EEGTLDRWQR IANAVGGKTS VEEVKKHYEI 60 LQHDIDLIES DKVPLPQYKT SEDKLGNQHM SLKHSNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-23 | 12 | 81 | 8 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02442.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029804.1 | 7e-68 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 4e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A059AS10 | 2e-66 | A0A059AS10_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029804.1 | 3e-67 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-26 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02442.1.p |
Entrez Gene | 104419745 |