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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02434.1.p | ||||||||
Common Name | EUGRSUZ_I02434, LOC104419736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 344aa MW: 38305.8 Da PI: 8.2354 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.9 | 1.8e-31 | 126 | 181 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eCl+NhAas+Ggh +DGCgEfmps geegt+ ++CaAC+CHRnFHR+ev+ Eucgr.I02434.1.p 126 SIRYRECLRNHAASMGGHIIDGCGEFMPS-GEEGTPGYFRCAACECHRNFHRKEVDG 181 789*************************9.999*********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 122 | 182 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-29 | 127 | 179 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.9E-28 | 128 | 179 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.399 | 129 | 178 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 271 | 341 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.16E-17 | 274 | 340 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.746 | 277 | 341 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 5.6E-26 | 279 | 336 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MELGDLEQER EMPSSLGYTP PHKDSSSKFS AANRRDQTLD QPNHLYPQNH HPPNPHQLAN 60 KPRREYQETD QDPFAVASPS PIAVATGGTS VSIKPHTEPP SPPQGQLTQS PTPQPQSVTA 120 LISTSSIRYR ECLRNHAASM GGHIIDGCGE FMPSGEEGTP GYFRCAACEC HRNFHRKEVD 180 GEPQYTPSLY YSSNKTNGQR AALPPPQHHA IPQPNPINLH HRFSYCISSA ATTTTTMALN 240 QPVMMAFGGG VPEESSSEDL TMIQHSDAVL RSTQLASSKK RFRTKFTQQQ KDKMMECAEK 300 LGWRIQKQDE QEVTQFCAEA GVTRKAFKVW MHNNKQAMKK QQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-21 | 278 | 337 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00238 | DAP | Transfer from AT1G75240 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02434.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029792.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A059ASS9 | 0.0 | A0A059ASS9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029792.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7279 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 8e-57 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02434.1.p |
Entrez Gene | 104419736 |