PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02376.2.p | ||||||||
Common Name | EUGRSUZ_I02376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24592.6 Da PI: 7.4293 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien++nrqvt+skRrngi+KKA+EL vLCda+v+++++s + kl+ey+s Eucgr.I02376.2.p 10 KIENDTNRQVTYSKRRNGIFKKAHELTVLCDARVSILMLSGNKKLHEYIS 59 79**********************************************86 PP | |||||||
2 | K-box | 86.1 | 7.4e-29 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yqk+ g +l+++++ ++q+el+kLk+ ++n ++e+R++lG dL++Ls+ eL++Leq +e+s++++R++K+++l++q+++ +kk ++ + Eucgr.I02376.2.p 71 YQKALGIDLWTTHYDRMQEELRKLKEVNNNFRKEIRQILGHDLNELSYAELHSLEQTIESSVNSVRQRKYHVLKTQTDTHKKKGATYEDLQYG 163 78899999********************************************************************************99999 PP K-box 94 Lrkkle 99 L++ +e Eucgr.I02376.2.p 164 LSEDIE 169 988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.586 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-35 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.85E-36 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.6E-21 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.962 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRGKIEIQK IENDTNRQVT YSKRRNGIFK KAHELTVLCD ARVSILMLSG NKKLHEYISP 60 TTTTKRMIDD YQKALGIDLW TTHYDRMQEE LRKLKEVNNN FRKEIRQILG HDLNELSYAE 120 LHSLEQTIES SVNSVRQRKY HVLKTQTDTH KKKGATYEDL QYGLSEDIEG DYESAVTNLS 180 NHTGASAMYA LRLHPSDHDL SSEGHFVPDL SLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02376.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029721.1 | 1e-154 | PREDICTED: floral homeotic protein DEFICIENS | ||||
Swissprot | Q003J2 | 1e-82 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A059ASK8 | 1e-156 | A0A059ASK8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029721.1 | 1e-153 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02376.2.p |
Publications ? help Back to Top | |||
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