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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02207.1.p | ||||||||
Common Name | EUGRSUZ_I02207, LOC104420746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 25666.4 Da PI: 5.413 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+e+++ + + +G g+Wk+I++++ +t+ q+ s+ qky Eucgr.I02207.1.p 141 AWTKEEHERFLGGLEIYGRGDWKSISKYVVMSKTPTQVASHAQKY 185 6*****************************999***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.9 | 34 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.89E-5 | 38 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.203 | 134 | 190 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 134 | 189 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.52E-16 | 136 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-16 | 137 | 189 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-9 | 138 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 141 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-9 | 141 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MANAAFPTSA TFLQECTSAE RSPEVGYVGY ENDGFGIWTF EENKRFENAL ATLSGEIDLA 60 TLDRFVQGIA PEFPGKSVEQ VGRHLEALWH DVELIESAEV TFPEHWTVDE GGDSDGGPPP 120 VQKSKGKSKV EPKGERKRGI AWTKEEHERF LGGLEIYGRG DWKSISKYVV MSKTPTQVAS 180 HAQKYFNRKD RTENQKLRRS INDTHNISNI GAIASMSSSP PSTRYPGETD A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02207.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030835.1 | 1e-172 | PREDICTED: transcription factor DIVARICATA | ||||
TrEMBL | A0A059ARW3 | 1e-171 | A0A059ARW3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030835.1 | 1e-172 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20625 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-35 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02207.1.p |
Entrez Gene | 104420746 |