PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I02056.1.p

Common Name

EUGRSUZ_I02056

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 351aa MW: 39025.1 Da PI: 6.2516

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I02056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	300.9	3.1e-92	2	348	34	373
GRAS 34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWp 126 +gdpmqRlaa f+ ALa r+++ ++++y+al + +++ + ++ a+ ++ ++P+l f+ + + +l+a++ge++vHi+D++ + + W+ Eucgr.I02056.1.p 2 TGDPMQRLAAWFASALAVRIVKRWPGIYRALLSHAER--DGPTAPPARPILAPAFPCLAFTRAVVARILLRALAGERAVHIVDLGSGDPELWV 92 69**************************9888887..5888889999**************************************** PP GRAS 127 aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..... 214 +Ll+ L++ p+gpp++R+T v++ +++ l +g+ L k Ae +g+pf+fn+ v +l +l+ e+Lr+++gE+laV ++l lh ll Eucgr.I02056.1.p 93 PLLRGLSQGPDGPPQFRLTCVSA----RRDVLDILGHALVKEAEIMGMPFQFNP-VNVSLRELTEEMLRLRSGETLAVVSMLGLHALLaeedr 180 *******************....9**********************.6889****************************** PP GRAS 215 .........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnv 297 ++sv+ +++ e+L++v+s sP+v+ +veqeadhn++++++rf+e l+yysa+fds++a l+ eer +E++ +grei+++ Eucgr.I02056.1.p 181 idadfgmikSDSVKESKRVGEFLSMVQSASPRVFFLVEQEADHNATRLVDRFVEGLHYYSAVFDSIDAALGGSCpEERLALEEM-FGREIEDI 272 ****9999999999***********************************************988888999999999.**** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 v+ceg er++rhe++++W rl aGFkpv+l +a+++ak ++ + dgy+v e+++ +++W++rpL++vSaW Eucgr.I02056.1.p 273 VSCEGLEREKRHERFARWAVRLAWAGFKPVRLWLNAMEDAKGAVEAHLRDGYKVVTERACTMICWHERPLLAVSAW 348 ************************************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.58	1	329	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-89	2	348	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTGDPMQRLA AWFASALAVR IVKRWPGIYR ALLSHAERDG PTAPPARPIL APAFPCLAFT 60 RAVVARILLR ALAGERAVHI VDLGSGDPEL WVPLLRGLSQ GPDGPPQFRL TCVSARRDVL 120 DILGHALVKE AEIMGMPFQF NPVNVSLREL TEEMLRLRSG ETLAVVSMLG LHALLAEEDR 180 IDADFGMIKS DSVKESKRVG EFLSMVQSAS PRVFFLVEQE ADHNATRLVD RFVEGLHYYS 240 AVFDSIDAAL GGSCPEERLA LEEMFGREIE DIVSCEGLER EKRHERFARW AVRLAWAGFK 300 PVRLWLNAME DAKGAVEAHL RDGYKVVTER ACTMICWHER PLLAVSAWSC *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTGDPMQRLA AWFASALAVR IVKRWPGIYR ALLSHAERDG PTAPPARPIL APAFPCLAFT  60
RAVVARILLR ALAGERAVHI VDLGSGDPEL WVPLLRGLSQ GPDGPPQFRL TCVSARRDVL  120
DILGHALVKE AEIMGMPFQF NPVNVSLREL TEEMLRLRSG ETLAVVSMLG LHALLAEEDR  180
IDADFGMIKS DSVKESKRVG EFLSMVQSAS PRVFFLVEQE ADHNATRLVD RFVEGLHYYS  240
AVFDSIDAAL GGSCPEERLA LEEMFGREIE DIVSCEGLER EKRHERFARW AVRLAWAGFK  300
PVRLWLNAME DAKGAVEAHL RDGYKVVTER ACTMICWHER PLLAVSAWSC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-38	3	349	53	379	Protein SCARECROW
5b3h_A	2e-38	3	349	52	378	Protein SCARECROW
5b3h_D	2e-38	3	349	52	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I02056.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029404.1	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	A0A059ASB9	0.0	A0A059ASB9_EUCGR; Uncharacterized protein
STRING	XP_010029404.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20661	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	2e-78	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Eucgr.I02056.1.p