PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01870.1.p
Common NameEUGRSUZ_I01870
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20024.9 Da    PI: 8.8145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.5e-152259845
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       rq tf kRr g+lKKA+EL   C++e a+i++s++g+
  Eucgr.I01870.1.p 22 ARQATFLKRRPGLLKKASELYAFCAIEMAIIVLSPRGE 59
                      69**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-10566IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.273767IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8929IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-171893IPR002100Transcription factor, MADS-box
PfamPF003191.1E-142163IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MATTATEGKT TLARMTKEGA NARQATFLKR RPGLLKKASE LYAFCAIEMA IIVLSPRGES  60
FYFGHPSMDA AAQTDRDQYL EKLNKRYANV LEQMKVGIKG AKELDDIKPL RFENLSFSEF  120
MVVDEWLEDV KKAVDKRRMD LVAPEVSSST PCPRAIDASI RSKTDDRCDN PRKAEAGNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01870.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030750.13e-59PREDICTED: uncharacterized protein LOC104420647
TrEMBLA0A059ARR21e-130A0A059ARR2_EUCGR; Uncharacterized protein
STRINGXP_010030757.11e-90(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-15AGAMOUS-like 29