PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01817.1.p
Common NameEUGRSUZ_I01817, LOC104419278
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30744.2 Da    PI: 4.3135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01817.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.6e-2159112356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq+  Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Eucgr.I01817.1.p  59 KKRRLTPEQVLLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 112
                       5678*************************************************9 PP
2HD-ZIP_I/II133.57.8e-4358149192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+e+L+ e+ 
  Eucgr.I01817.1.p  58 EKKRRLTPEQVLLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDYLKSSYDSLLSDYDSILKENEKLKLEVY 149
                       69*************************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.2254114IPR001356Homeobox domain
SMARTSM003895.3E-2057118IPR001356Homeobox domain
SuperFamilySSF466893.51E-2059126IPR009057Homeodomain-like
CDDcd000865.60E-1959115No hitNo description
PfamPF000465.1E-1859112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-2260121IPR009057Homeodomain-like
PRINTSPR000313.9E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000313.9E-694110IPR000047Helix-turn-helix motif
PfamPF021833.8E-17114156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEAGRFLFDP PALQGNILFL DKGSRSMMGM EESPKRRRFF CSPDELFDEE YYDEQMPEKK  60
RRLTPEQVLL LEKSFEEENK LEPERKTQLA KKLGLQPRQV AVWFQNRRAR WKTKQLERDY  120
DYLKSSYDSL LSDYDSILKE NEKLKLEVYS LTEKLQGKEV DGAPMTGPSE PAPLEEADVQ  180
AVQFSAKVED RLSTRSGGSA VIDEEGPQLV DSGNSYLLCE NYPGCVAQSE DDGSDDGRSY  240
FPGVFAAATE QPHHEEEEEP MDWWVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01817.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029204.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022839e-90HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A059AQE80.0A0A059AQE8_EUCGR; Uncharacterized protein
STRINGXP_010029204.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-73homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]