PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 253aa MW: 26713.7 Da PI: 4.6278

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01576.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.9e-19	28	76	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Eucgr.I01576.1.p 28 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 76 56****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-34	27	90	IPR001471	AP2/ERF domain
CDD	cd00018	2.83E-29	27	83	No hit	No description
PROSITE profile	PS51032	20.719	27	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-29	28	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-8	28	39	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.71E-21	28	85	IPR016177	DNA-binding domain
Pfam	PF00847	5.3E-12	30	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-8	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0010030	Biological Process	positive regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSSPSSSSKG NKKQPPAGES SAAGGGRFLG VRRRPWGRYA AEIRDPSTKE RHWLGTFDTA 60 EEAALAYDRA ARSMRGSRAR TNFVYSDLPA GSSVTSILSP DEAQQQNFSP IFANSAPRPD 120 PAPQLDAGGY AESAWSTSAY YSQQADAAPY GGGGGGAYSQ CHYDNVELPP LPSDMSGYSG 180 YSGSDTSSYS YGDTVPSNCY SDFHDPAAAS GNGPSFGFDS TEEYVHSPLF SRMPPVSDSV 240 PDSFNLGGSY FF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-19	23	83	1	62	ATERF1
3gcc_A	2e-19	23	83	1	62	ATERF1
5wx9_A	3e-19	18	83	5	71	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11044410, ECO:0000269\|PubMed:12472696, ECO:0000269\|PubMed:16339853}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00509	DAP	Transfer from AT5G13910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01576.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By imbibition. {ECO:0000269\|PubMed:16339853}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT724716	4e-42	KT724716.1 Triticum turgidum AP2/ERF transcription factor (NILbh-1) gene, NILbh-1-2AS allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028918.1	0.0	PREDICTED: ethylene-responsive transcription factor LEP
Swissprot	Q9M644	6e-56	LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBL	A0A059AQP3	1e-180	A0A059AQP3_EUCGR; Uncharacterized protein
STRING	XP_010028918.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	3e-36	ERF family protein

Link Out ? help Back to Top
Phytozome	Eucgr.I01576.1.p
Entrez Gene	104419086

Publications ? help Back to Top
van der Graaff E,Nussbaumer C,Keller B The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene. Mol. Genet. Genomics, 2003. 270(3): p. 243-52 [PMID:12910411] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]