PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01293.1.p
Common NameEUGRSUZ_I01293, LOC104418856
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 670aa    MW: 73399.4 Da    PI: 5.7388
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.3e-094144511954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Eucgr.I01293.1.p 414 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 451
                       664459******************************88 PP
2BELL122.71.6e-39276347172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erqelq+k akL s+l+eVd+rYkqy+ q+q+v+ssF+++ag g+akpYt+lAl++iSrhFrcL+dai+ qi
  Eucgr.I01293.1.p 276 ERQELQSKLAKLSSMLDEVDRRYKQYYYQMQIVVSSFDVIAGPGAAKPYTALALQTISRHFRCLRDAISTQI 347
                       79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-61206345IPR006563POX domain
PfamPF075265.2E-50211344IPR006563POX domain
PROSITE profilePS5007112.05392455IPR001356Homeobox domain
SMARTSM003893.2E-9395459IPR001356Homeobox domain
CDDcd000866.64E-13395456No hitNo description
SuperFamilySSF466894.71E-17396462IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28398461IPR009057Homeodomain-like
PfamPF059202.6E-17412451IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSTYYTSSSD QRDAAPVLYL REHAPTSHAE EPLLPGNNMT YVTSGFFSSA LTGNPQQQSN  60
GMDMLSVGGL DTMPQHQAMF SGLGGSQMSD HGLAGWRDGR NEMLFMQPMA SHSTVQDGQN  120
MQGQGLSLSL GTHIPSGIHI PSSQYRSQNL GLTAFLSPNS SKSAESNSRN GSTVDEQPRS  180
AEFFPQSLVG ANQDLNTGNF SVNGMSNMSR MLSNSRYLRA AQQLLDEVVN VRKALKQSDS  240
EKIKKSEEGD EDSKKDVVSN PQESDGNSAG DLSQAERQEL QSKLAKLSSM LDEVDRRYKQ  300
YYYQMQIVVS SFDVIAGPGA AKPYTALALQ TISRHFRCLR DAISTQIQAT RKSLGEQDAS  360
GSSKGVGIPR LRFLDQQLRQ QRALQQLGMM QQHAWRPQRG LPESSVSILR AWLFEHFLHP  420
YPKDSDKILL ARQTGLTRSQ VSNWFINARV RLWKPMVEEM YKEEIGDAEM DSNSSSDTAK  480
PKTGDIKSSM EDRVEEVQQS STATQRCSSG QLMDSSFDRT PDVEMAGHSV GFNYLNGRHR  540
DVEAEYGQMK LNGEQAGVDD CGLFQNSMVQ SGSNNDRFMA AAAAYQMAEL GRFGGGSGVS  600
LTLGLQHCEG GTLPVSTGAH SGFLAMRGDD MYNQAASSIG TETTEFESIN IGNQQQRFGS  660
TQLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16401458158Homeobox protein Meis1
4xrs_B3e-16401458158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01293.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028619.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_010028620.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_010028621.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A059ANW60.0A0A059ANW6_EUCGR; Uncharacterized protein
STRINGXP_010028619.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-118BEL1-like homeodomain 6