PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01278.1.p
Common NameEUGRSUZ_I01278, LOC104418844
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 86aa    MW: 9491.41 Da    PI: 6.5246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01278.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-071356344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +++ +a +++ ++   +W  +ar +  g+++ ++k ++
  Eucgr.I01278.1.p 13 SWTPIQNKQFERALALYDKDtpdRWQNVARAVE-GKSADEVKRHY 56
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-71062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-51366IPR009057Homeodomain-like
SuperFamilySSF466893.74E-121367IPR009057Homeodomain-like
CDDcd001672.25E-61360No hitNo description
PfamPF002491.6E-51357IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASSSLSRNH GSSWTPIQNK QFERALALYD KDTPDRWQNV ARAVEGKSAD EVKRHYEALV  60
EDLDQIESGR IPVPNYKSGG NSSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32184182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01278.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795931.11e-39protein RADIALIS-like 3
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A059ANE63e-56A0A059ANE6_EUCGR; Uncharacterized protein
STRINGXP_010028603.15e-57(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-35RAD-like 6