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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01273.1.p | ||||||||
Common Name | EUGRSUZ_I01273, LOC104418839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9452.48 Da PI: 9.5785 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 12 | 56 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ + + +a + + ++ +W+ +a+ +g g+t++++k ++ Eucgr.I01273.1.p 12 SWTAKQNKAFEEALAVYDKDtpdRWHNVAKAVG-GKTAEEVKRHYE 56 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.282 | 8 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 2.1E-8 | 9 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-6 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.89E-13 | 11 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-7 | 12 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.34E-7 | 13 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASSSMSRGS SSWTAKQNKA FEEALAVYDK DTPDRWHNVA KAVGGKTAEE VKRHYELLVE 60 DVKHIESGRV PFPNYRTTGR GNVNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-38 | 1 | 83 | 1 | 80 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01273.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718843.1 | 4e-58 | PREDICTED: protein RADIALIS-like 3 isoform X1 | ||||
Swissprot | Q58FS3 | 8e-38 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A059AND9 | 9e-57 | A0A059AND9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010028595.1 | 2e-57 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-39 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01273.1.p |
Entrez Gene | 104418839 |
Publications ? help Back to Top | |||
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