PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00824.1.p
Common NameEUGRSUZ_I00824
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 622aa    MW: 72246.9 Da    PI: 8.3022
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00824.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55e-191396390
              FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      Y +YA   GF vrk k +k+ ++geit+rtfvC++eg++ +++++  +++ ++ e r+gC+a ++ k e +g++ev++ + +HnHe+ 
  Eucgr.I00824.1.p 13 YVAYAIGKGFGVRKFKIRKN-DKGEITRRTFVCNCEGYSINSSDQ--ERKYEKLEVRCGCHAFIRFKVE-NGTYEVIDYVPKHNHEFI 96
                      99**************9998.8888**************999877..8888999**************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-161396IPR004330FAR1 DNA binding domain
PfamPF105516.9E-33218312IPR018289MULE transposase domain
PROSITE profilePS509668.333498534IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MVFASELEAY HKYVAYAIGK GFGVRKFKIR KNDKGEITRR TFVCNCEGYS INSSDQERKY  60
EKLEVRCGCH AFIRFKVENG TYEVIDYVPK HNHEFIPKHQ RYLIRCGRMI SDTCKGVLVD  120
MAKAGIGGTT AYKFLANEAG GNQNLGFILR DCQNFLQGER LNYIEGGDCQ SLLNHFHCMQ  180
MQNPIFFYAQ QVDQDGRLTN LFWRDSLSKF DYDCFGDVMV FDTTYRTNRY SLICAPFVGV  240
NYHWKNTLFG CAFLLDETAD SFIWLFEVFL KSMGNKAPKT IFTDQDHAMA KAIQIVFPNT  300
QHRLCTWHIE KNANKNIPHL YQKLIFKDKY FSRLMYKCKS ENEFETTWRK MQEEWDTENN  360
SWLQRLYDLR HKWSSAFGRD IFSCGIKSSQ RSESTNNVFQ QFSKKTSTLI QFVHYYEEQL  420
KHMREIENQD DYSSRGTPRL QISYNGILTH AASVYTRAIF RRFYEEFLQS LSERISGTTF  480
DGFIYEYTLK CDGIQSEHVV RFNPTDFSVS CECKLFESKG WLCRHALHIL NGNISVSAIP  540
SSYVLKRWTK GAKQGYVNDE SHEISPGPST FNRFSALMQS AFEVMSLGAQ DENTMRIAKK  600
NLKATVAEIA SYNSSVTVTN DA
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00824.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056981.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059AM050.0A0A059AM05_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010056981.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5