PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.I00608.1.p | ||||||||
Common Name | EUGRSUZ_I00608, LOC104418377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 39158.1 Da PI: 4.608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 181 | 224 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Eucgr.I00608.1.p 181 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 224 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-15 | 178 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-12 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 181 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.41E-5 | 182 | 224 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-15 | 182 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MELSEQGLLE ELLAPRREMA TCWTTFQHND LPLPPCWSLD SSGDNPAFAS SNPLQILSLS 60 HQPAGFDDAR FAGAYHPLDV VHTYTVPSEL EYTANYNNSN DAYSSMVEDE EMFDLIGNDI 120 YVQCAEERMM AMNSCKVEAS EQAADINNGG FAGNTDAGSS YCFEKRSSRP KKLEGQPSKN 180 LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLDKINR LQDEEEIEVG 240 TGSPRKLMGI SKDLKPNEVL VRNSPKFDVE RKDTDTRIDI CCATKPGLLL STVNTLEYLG 300 LELQQCVISC FNDFSMQASC SEVNEGRPPS SPEDIKQALF KNAGYGGRCL * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 183 | 190 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.I00608.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027998.1 | 0.0 | PREDICTED: transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 3e-86 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A059AMN0 | 0.0 | A0A059AMN0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027998.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-88 | beta HLH protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.I00608.1.p |
Entrez Gene | 104418377 |
Publications ? help Back to Top | |||
---|---|---|---|
|