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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Eucgr.H04617.1.p |
Common Name | EUGRSUZ_H04617, LOC104415664 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family |
MIKC_MADS |
Protein Properties |
Length: 254aa MW: 28962 Da PI: 8.2034 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Eucgr.H04617.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Eucgr.H04617.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 93.8 | 2.8e-31 | 85 | 175 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
e+ + s+qqe+ +Lk+++e Lqr+qR+llGe+L++Ls keL++Le+qL+ slk+iRs++++++l+q+ +lq++e+ l+e+n++L+++l+e
Eucgr.H04617.1.p 85 RESLELSCQQEYLRLKARYEALQRTQRNLLGEELGQLSSKELESLERQLDGSLKQIRSRRTQYMLDQLTDLQHREQLLHEANRTLNQRLME 175
55556689*******************************************************************************9986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-34 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.836 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-24 | 91 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0048481 | Biological Process | plant ovule development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGALEP NVSARESLEL SCQQEYLRLK ARYEALQRTQ RNLLGEELGQ 120 LSSKELESLE RQLDGSLKQI RSRRTQYMLD QLTDLQHREQ LLHEANRTLN QRLMEGYQVN 180 ALQLNQHAEE VGGYGHPPPP PLPPQPLAQP HSEAFFHPLE CEPTLQMGYQ PDPVSSVITG 240 GPSINNFMPG WLP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 1e-41 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-41 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-41 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-41 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF029975 | 0.0 | AF029975.1 Eucalyptus grandis MADS box protein (EGM1) mRNA, complete cds. |