PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04383.1.p | ||||||||
Common Name | EUGRSUZ_H04383, LOC104415462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 660aa MW: 73800.5 Da PI: 6.5437 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.6 | 1.4e-12 | 116 | 166 | 1 | 56 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 +Wt +evlaL ++r+ me+++ + We++s+k++e gf+r++ +Ck+k+e+ Eucgr.H04383.1.p 116 QWTSDEVLALFKIRSGMENWFPEF-----IWEHISRKLAELGFRRTAAECKDKFEE 166 7********************998.....9************************96 PP | |||||||
2 | trihelix | 95.2 | 6.2e-30 | 503 | 598 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rW+++ev+aLi++r ++e + ++g+ ++plWe++s+km+e g+ers+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf Eucgr.H04383.1.p 503 RWPRDEVQALINLRCslnggtnnedhKLEGSNNNGNNRAPLWERISQKMSELGYERSAKRCKEKWENINKYFRKTKDNDKKR-SLDSRTCPYF 594 8**************777777777766666666788*********************************************8.9999****** PP trihelix 83 dqle 86 +ql Eucgr.H04383.1.p 595 HQLS 598 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.8E-8 | 115 | 166 | No hit | No description |
CDD | cd12203 | 7.03E-13 | 115 | 165 | No hit | No description |
PROSITE profile | PS50090 | 6.121 | 117 | 168 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 9.6E-20 | 502 | 599 | No hit | No description |
CDD | cd12203 | 1.01E-23 | 502 | 578 | No hit | No description |
PROSITE profile | PS50090 | 6.922 | 503 | 571 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MFDGVPDQFH QFLASSRASS LSLPLPFPLQ HASSPPPPPL ASLNFAAFDL YPPQHHHLQQ 60 PPPQFLQPLH QPPRAQKDII HEEIDGENSL VPVNLGIDQR DRSKLAEAAT VDDDRQWTSD 120 EVLALFKIRS GMENWFPEFI WEHISRKLAE LGFRRTAAEC KDKFEEESIS SYTPASASYP 180 KNDRLLSELE ELCNSNHGDH QNNPPILAAD KSTDNKVGKL RAGEEEDKMA GQMIQNFDGA 240 NSRNELRATV NDASEQNYKK AATDDKDHIN RSSSKGKKRK RSQEERLVKY ELFKGLCESV 300 VQRLMAQQEE MHNKLLEDMV RREKEMVEKE EAWKRQEMER MNKELDARVH EQAIAGNRQA 360 TIIEFLKKFT SFDGDDDHSP HLLTNSSSPC SLAEPNSSNP NDNSSTSHMG THKQSHAAEV 420 PTSSSLENHN HSTCSSSFQS TPTKQDPSSA SAAMAQTESR SNPPTLTAMT PQNPNPPNPH 480 QKTHHGSQNS APNAAKDPDL GKRWPRDEVQ ALINLRCSLN GGTNNEDHKL EGSNNNGNNR 540 APLWERISQK MSELGYERSA KRCKEKWENI NKYFRKTKDN DKKRSLDSRT CPYFHQLSHL 600 YSQGKLAATA TATATATVPP ADQPLPETSA HGDSSAAQFS AGRDKDVANQ VAPAANFEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | KKRKRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04383.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010025058.1 | 0.0 | PREDICTED: trihelix transcription factor GTL2 | ||||
TrEMBL | A0A059B601 | 0.0 | A0A059B601_EUCGR; Uncharacterized protein | ||||
STRING | XP_010025058.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 2e-68 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04383.1.p |
Entrez Gene | 104415462 |