PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03871.1.p
Common NameEUGRSUZ_H03871, LOC104415106
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 485aa    MW: 51096.9 Da    PI: 7.3163
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03871.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-096688527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                       C +++rtG C yG+ C+F+H++
  Eucgr.H03871.1.p 66 DCIYYLRTGNCGYGAGCRFNHPR 88
                      7********************96 PP
2zf-CCCH38.42.1e-12110134327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+f++rtGtCk+G++Ck++H++
  Eucgr.H03871.1.p 110 QPNCQFYMRTGTCKFGASCKYHHPR 134
                       789********************96 PP
3zf-CCCH352.4e-11155180227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+ +tG Ck+G++CkF+H++
  Eucgr.H03871.1.p 155 GEKECSFYVKTGRCKFGATCKFHHPQ 180
                       6789********************97 PP
4zf-CCCH36.67.3e-12317343127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tG C+yG++Ck++H+p
  Eucgr.H03871.1.p 317 PGQPECQHYLKTGDCRYGSSCKYHHPP 343
                       5789*********************97 PP
5zf-CCCH283.6e-09365387326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        ++C++far G+Ck+G+ Ck+ H+
  Eucgr.H03871.1.p 365 APPCMHFAR-GECKFGPACKYDHS 387
                       689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-46188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8966189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-66190IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-76588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-46788IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178107135IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5107134IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4113135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009153181IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5153180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6155181IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8155180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4159179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361316344IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6316343IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746362389IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5362388IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7365387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDGYAGGHEG SRSDPSPEWP HDSEADTGLE EPMWQLGLGS GGGGGGGGEG EGEPDLAYPE  60
RTEAADCIYY LRTGNCGYGA GCRFNHPRDR STVMGATRAG GAEYPERAGQ PNCQFYMRTG  120
TCKFGASCKY HHPRHGAGSS SPAPLNLCGY PFRQGEKECS FYVKTGRCKF GATCKFHHPQ  180
PAGVHVHAPS PPLQVAPPPI PVAPPSSYPA MQSPSVPSSQ QYGVVMARPP LVPSYVQGPY  240
GPLLVSPSIF PSWNPYQAPV SPLASSSPQA GSGSSSVYGV TQLSPSAPAF PWPYQPSPSS  300
LGPSVNGRRE QSFPVRPGQP ECQHYLKTGD CRYGSSCKYH HPPDWNALNV NIVLSPTGLP  360
IQPGAPPCMH FARGECKFGP ACKYDHSFGP PSYSPSVSSL GDPFPAGFPF GMLFPSYSSP  420
ELRAEIISGP TEDSLPTRSS STTSMSVTSV GSARASSGPM PSQLPDLSST NLANCNNKER  480
HSPG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03871.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716905.10.0PREDICTED: zinc finger CCCH domain-containing protein 58 isoform X3
TrEMBLA0A059B4D70.0A0A059B4D7_EUCGR; Uncharacterized protein
STRINGXP_010024647.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-118C3H family protein