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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H03425.1.p | ||||||||
Common Name | EUGRSUZ_H03425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | CPP | ||||||||
Protein Properties | Length: 801aa MW: 87950.7 Da PI: 6.5782 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50 | 5.9e-16 | 477 | 514 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C dC Nk Eucgr.H03425.1.p 477 CKRCNCKKSKCLKLYCECFAAGVYCIEPCACLDCLNKP 514 89**********************************96 PP | |||||||
2 | TCR | 50.5 | 4.1e-16 | 561 | 600 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ Eucgr.H03425.1.p 561 RHKRGCNCKKSGCLKKYCECYQGGVGCSFNCRCEGCKNSF 600 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.5E-17 | 475 | 516 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.903 | 476 | 601 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-11 | 478 | 513 | IPR005172 | CRC domain |
SMART | SM01114 | 9.9E-17 | 561 | 602 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-11 | 563 | 599 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MDTPEKTQIA APPVSAHEDS PVFNFIRSLS PIKPVKSTHI AQTFTSLPFT ALPSVFTSPH 60 ANFHKDPSFL RRHQSLDPSN PDCSSENHNI VCRNGDFING ISQRSKSSDK KVSVEVHAEP 120 CKEHSDFATE FPQTSRCGFY NPEGNMTTCS AGAEAAVETA GMSTPIIPLA MKSSGKPLPE 180 GEGQQQKEWP IDASDLFIFS SPNDVEAFRE LVHRSPDFGT ACLSSLMSRF TPDDVSGFER 240 SQQVDLPSRE QQQIEPPYPT DEAYGQKEAI KNLDYHNLDK FLDKYMSIQL DKNSHNDAGT 300 CVPFDYTPVP NFHRGLRRRC LDFEIAELRK LSGDDSDYSH IALSQHDENT LVNDGQLPVE 360 SEGDPLRCTL PGIGLHLNAL ATTSNDYQSV EHGNLLSENQ LMNTQISSSS LNLPNSHQSL 420 HESLTSVASE DIGSADNGVL VVQDGSQSCA YPDSEELDHN SPQKKRRKAE HSEDMACKRC 480 NCKKSKCLKL YCECFAAGVY CIEPCACLDC LNKPIHEDTV LATRKQIESR NPLAFAPKVI 540 RASDSFPDTG DDSNKTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSFN CRCEGCKNSF 600 GRKDGSTLNG VEAEIIDEGK ENIGKSMGNQ RSLEVAKQRD PIQATPSAYY GYHHVASLLL 660 INFHNDTKNT KWSSVCTRPS IQTTYSAKNE PLRSTSLVTT SSSSVLHAGQ NQGTHKHVAP 720 QPEFEKHYDD NNNNNNSNAG GKMPEVLRSN DTPNAVIKTA SPNGKRVSSP HSDFGSSPPL 780 RSGRRLILKS IPSFPSLTQH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-18 | 480 | 598 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-18 | 480 | 598 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 463 | 467 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H03425.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010024233.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A059B456 | 0.0 | A0A059B456_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024233.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-125 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H03425.1.p |