PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H03258.1.p | ||||||||
Common Name | EUGRSUZ_H03258, LOC104417296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 306aa MW: 32877.7 Da PI: 6.8408 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++ Fs++ L H++ H Eucgr.H03258.1.p 112 FACNFCKREFSTSQALGGHQNAH 134 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.04E-6 | 109 | 140 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 110 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAIVPCPSEG PSISAASGET LACDNHRHKA KNRLTMNEKT AEAEAEAEAK PKPAPHHHVA 60 NQEIPIDDDD DGGVRSTDLD LKLFNQGLPS NARKSGESST DENCKVPKAR VFACNFCKRE 120 FSTSQALGGH QNAHKQERAL AKQRKGMEAD LLGVHPHMSY YYSGVPQMPL YGSIGRALGI 180 RHESMIHKPS YPSSVLPGYR FGGLRQVSGV NPNSRPPLDR TRVESLQAYG GASGLGEPPP 240 PPPPPPPPPP ATSFDGSASF VVHQAQVDVR QDNNRPMKKE GDHPEEEVPQ SDGSDPSGID 300 LTLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H03258.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026900.1 | 0.0 | PREDICTED: zinc finger protein 8 | ||||
TrEMBL | A0A059B2R4 | 0.0 | A0A059B2R4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026900.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8738 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 4e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H03258.1.p |
Entrez Gene | 104417296 |