PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02514.1.p
Common NameEUGRSUZ_H02514
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 606aa    MW: 69646.6 Da    PI: 8.0779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02514.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.7e-09422462346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT+eE el  + ++q+G++ W+t a  +g  R + ++k+ w+ 
  Eucgr.H02514.1.p 422 TWTPEECELVRKFHEQHGSN-WRTLADALG--RHRFHVKDTWRR 462
                       6*****************99.********8..999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-4346410IPR009057Homeodomain-like
SMARTSM007175.6E-5346417IPR001005SANT/Myb domain
PROSITE profilePS500904.124349410IPR017877Myb-like domain
PROSITE profilePS500906.783415463IPR017877Myb-like domain
SMARTSM007170.0013419466IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-7420480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-9422473IPR009057Homeodomain-like
PfamPF139212.1E-11423480No hitNo description
PROSITE profilePS500907.236464532IPR017877Myb-like domain
SMARTSM007171.4468534IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-6474533IPR009057Homeodomain-like
SuperFamilySSF466891.4E-6512595IPR009057Homeodomain-like
PROSITE profilePS500907.584534587IPR017877Myb-like domain
SMARTSM0071781538589IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MGGKKEKRGR REEDRIGVAM GVDRREVDAG DGVENGDDKV DRDKKKGKTK REVLGDGSEF  60
VAEYGKGSVG DENEGGRSEK KKKKRKREVG RDEKELEKAV KKGSTLSEGN ERGGGKSVSE  120
VPQIVEDGDG HTHDGDFENM EDRLQIQTKK KKNKKHKDFK EMDDVDAAFS ATKHFADDRH  180
EAGVQEQNKS LVKNIEEIKD TDEGGIRKKK KKKGRRDSDP VGDNQKEEEA SRSSDAEIAK  240
KDIREKERRK RKKQKRIEEQ GHVASGNLDK EYMESEAFTN DNMGSEEKKP IKDRKRKKDK  300
AAKGGIEGKD RKKKAKRVSF AENVEFFPPS DGLSEEDNSK DGNLVRGKKF SKEEDELVKE  360
AVYNYIEAHN LGEDGLKMVL NCGSHPEARN CWKEIGVYLP WRPNESVYHR AHLLFERSEN  420
RTWTPEECEL VRKFHEQHGS NWRTLADALG RHRFHVKDTW RRIKFPYKKG PWSQDEYQQL  480
FDLVNMDLRM KAAEERKSKH GMLLDNIAWG AISDNLGSRN HAVCCEKWYK QLTSPMVAEG  540
TWADTDDYRL LNALVDLDAC SIEDVDWDKL IENRSGDLCQ KRWNQMVKYI GSYWSKSFPE  600
QETED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KKKKRK
2206212RKKKKKK
3243252REKERRKRKK
4247255RRKRKKQKR
5293297RKRKK
6293298RKRKKD
7293299RKRKKDK
8295313RKKDKAAKGGIEGKDRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02514.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023479.10.0PREDICTED: transcription termination factor 1
TrEMBLA0A059B0K00.0A0A059B0K0_EUCGR; Uncharacterized protein
STRINGXP_010023479.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-117MYB_related family protein